Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1250 ATGGACAACACTACTGAGAGAGAGACCCACGACTTCATGAACGTCCATTCTTTCTCTCAGCTCCCCTTCCTCCGCCCCGCACCACCCTCCAAAGACAAAGCCATTCGCCTCTTCGGCCATGAATTTATCGACGCGCCCACCTCCAACACGTTTATGATCTCCAACAACAACGTTAGCCCTTCCCAACATAATAATACCAACAAAGACGTCAACAACAACAACGTAGAAAACAACGGCGCCGAGAGCAGCCGCAGATTCGAGTGCCATTATTGTTGCAGAAACTTCCCCACTTCCCAAGCCTTAGGCGGCCACCAAAACGCGCACAAACGAGAGCGCCAGCACGCGAAACGACACCTTCAAAGTACCCTGATCTCCGATGCAAACGCGTATAGCTTCATGAACTACAGGTTCGGTTCAACGGCGATGTCTAATTACTCTTACTCTTCTTCTTATCCAACGTGGAATAGTTCCAACTCTTCAAGCGCTATGATTGGAAGGTTCTACGGAAACTCCTATTCTCATCAGCAACTTCAACCTATAAATGGAAGCCCTTTGGGTTCGTGGCGAATCCCCACCGCCGCCACAACTGCTCATGCGCAAAGTAACCCTATTTTCAACCGTGAATGCTCGTTGCATCCTTTGCCTTTGTTTTCAGGTGAGGAAATGGTGAACGCGAGGATGGGGTTCTCCGGTTCGCAGAACCGGTTTGGTAATTATGACCCCAAGTCCAGCGTAAACGACCATCTGAGTTTGGATCTTCATCTGTAA 768 0.4935 MDNTTERETHDFMNVHSFSQLPFLRPAPPSKDKAIRLFGHEFIDAPTSNTFMISNNNVSPSQHNNTNKDVNNNNVENNGAESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLQSTLISDANAYSFMNYRFGSTAMSNYSYSSSYPTWNSSNSSSAMIGRFYGNSYSHQQLQPINGSPLGSWRIPTAATTAHAQSNPIFNRECSLHPLPLFSGEEMVNARMGFSGSQNRFGNYDPKSSVNDHLSLDLHL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1250 255 Gene3D Classic Zinc Finger 60 136 - -
Gso19g1250 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Gso19g1250 255 PANTHER ZINC FINGER PROTEIN GIS 1 255 - -
Gso19g1250 255 MobiDBLite consensus disorder prediction 58 78 - -
Gso19g1250 255 PANTHER ZINC FINGER PROTEIN GIS 1 255 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Gso19g1250 255 Pfam C2H2-type zinc finger 85 110 - -
Gso19g1250 255 SUPERFAMILY beta-beta-alpha zinc fingers 83 114 IPR036236 -
Gso19g1250 255 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1250 Gso-Chr19 41033411 41034620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1250 1 255 C2H2 Transcription Factor Family AT3G58070 39.711 7.74e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1250 - - gmx:100814129 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1250 19 41033411 41034620 Gso3g1248 3 38159891 38161188 GST
Gso19g1250 19 41033411 41034620 Gso2g1450 2 27994749 27996868 PCT
Gso2g1450 2 27994749 27996868 Gso19g1250 19 41033411 41034620 PCT