Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1245 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGGCCCCCGGCAAACCAATACCCAACTGCACCACCTAGAGGGGGTAGCACATACGGAGGAGGTAATGATAGAGGAGAGCCTAGGGGAAATGTTGCGAAGAGTGGTGCCCCGCAGAAAGTATTGCCGATTGAGATACCCTCTATGCCATTGGATGAATTAAACAGGTTAACAGGAAACTTTGGTACAAAGGCTTTTATTGGCGAAGGTTCTTATGGACGAGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCAATTAAGAAGCTGGATACCAGTTCTTCCGCAGAACCTGACTCAGATTTTGCGGCTCAGTTATCGATTGTTTCAAGACTGAAGCATGACAATTTTGTGGAGTTGATTGGATATTGTCTAGAGGCAGATAACAGACTTTTGGTTTATCAATATGCAAGTCTTGGTTCTTTGCATGATGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTATTAAGTTGGAGCCAGAGAGCAAAAATTGCATTTGGTGCAGCTAAAGGTCTAGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCTAGCAATGTCTTACTGTTCAACGACTATGAGGCCAAGATAGCTGATTTCAGCTTAACAAATCAGTCTTCTGACACAGCCGCCAGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCCCCAGAGTATGCCATGACAGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTTAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTATCCTCCAAAGGCTATTGCTAAGTTGGGTGCTGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACCATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCAGCTGGTCCCGACTCTCATGCTTGA 1098 0.4508 MLCCGGAEEESSGPPANQYPTAPPRGGSTYGGGNDRGEPRGNVAKSGAPQKVLPIEIPSMPLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDTSSSAEPDSDFAAQLSIVSRLKHDNFVELIGYCLEADNRLLVYQYASLGSLHDVLHGRKGVQGAEPGPVLSWSQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLGAVAALCVQYEADFRPNMTIVVKALQPLLNAKPAGPDSHA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1245 365 Gene3D Transferase(Phosphotransferase) domain 1 150 360 - -
Gso19g1245 365 CDD STKc_IRAK 78 353 - -
Gso19g1245 365 PANTHER OS03G0226300 PROTEIN 1 364 - -
Gso19g1245 365 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
Gso19g1245 365 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Gso19g1245 365 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1245 365 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 364 - -
Gso19g1245 365 MobiDBLite consensus disorder prediction 1 48 - -
Gso19g1245 365 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
Gso19g1245 365 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Gso19g1245 365 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Gso19g1245 365 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1245 Gso-Chr19 40916174 40919541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1245 36 357 Receptor kinase-like Gene Family AT3G58690 43.252 1.66e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gso19g1245 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1245 - - gmx:100812507 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1245 19 40916174 40919541 Gso3g1241 3 38048892 38052182 GST