Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1244 ATGGATAATTTGAATGAGGGAAGAGATGTAGCATGCCATAAAAGCAGGAGCTCTGGTTCCTTGTCATCCGGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTACGAAACGGGGAAAGCTAAATCTGAGGCCAAGAGTAACATTACATCCACAAAATCTAGCGTTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGGGTGTATGAATTACTTGGATGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCATCCTGCCATCATGATCTTGGGAATATAAGGTGTTTAGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGTCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGCGGATTTCGTCCATACAATTGTCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATCCCTACTCTTGTTGCTCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCACCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCAGCTCCAGTGTATATGGCATTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAGCTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGGCTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTAAGAATCACTGGTCGTATATGGAGAGAAGAATGA 1029 0.4218 MDNLNEGRDVACHKSRSSGSLSSGKKYCRSGLAMAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNITSTKSSVGLSGKSGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWREE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1244 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 34 342 - -
Gso19g1244 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 146 IPR013083 -
Gso19g1244 342 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 202 335 IPR008974 GO:0005515
Gso19g1244 342 ProSiteProfiles Zinc finger RING-type profile. 94 130 IPR001841 -
Gso19g1244 342 MobiDBLite consensus disorder prediction 60 79 - -
Gso19g1244 342 MobiDBLite consensus disorder prediction 1 24 - -
Gso19g1244 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 201 IPR013083 -
Gso19g1244 342 MobiDBLite consensus disorder prediction 61 79 - -
Gso19g1244 342 ProSiteProfiles Zinc finger SIAH-type profile. 147 207 IPR013010 GO:0008270
Gso19g1244 342 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 342 - -
Gso19g1244 342 SUPERFAMILY TRAF domain-like 147 339 - -
Gso19g1244 342 SUPERFAMILY RING/U-box 86 136 - -
Gso19g1244 342 Pfam Seven in absentia protein family 136 335 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso19g1244 342 CDD RING-HC_SIAHs 94 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1244 Gso-Chr19 40909233 40913779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1244 34 342 C3H Transcription Factor Family AT2G41980 79.612 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1244 K04506 - gmx:100813966 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1244 19 40909233 40913779 Gso3g1240 3 38040248 38044839 GST