Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1238 ATGGAGCTAGCTTTGAGCTTAGGCGACACACCCAAGCCCTTCTCTTTGCCCGCAAAAAATGATTCTGTGAGTTTCAAAATAGCACTGGGTGACGACAAAAGGGTTTCTTCAGATCCACCCGTTCAGCTCGACCTTCTTCCTTCAACACCAGTTCTTCCTTCTTCACGCCTTCGAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGTGTGACATCAGAGATTCCGGTGAGGGCGGTGGATGACACTGACGATGGTGCTGCACTTTCATCCCCCAACAGTGCAGTGTCATCTTTTCAGATGGATTTTTGTTTCAGGAACAGTAGAAAGTCTTGTGAGGGTGCCAGCGACGAGGACGACGAAAATGGCTCAACAAGGAAGAAACTTAGACTCTCCAAACAACAATCAGTTTTCCTCGAAGAGAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCGCTTGCAAAACAGTTAAATCTCCGTCCACGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTAAAGAGATGTTGCGAGAGTCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACATGTCAGCCATTTTTCATGCAGCTTCCAGCTACCACTCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCAACACCACCACCACCGGCGCCGCCGCCGCAGCTGCCACAACCAACAATTATAATAATGTCGCTTCTGCCCCCATGGCCACCAACAATAATAGCGTTTCTCAAATCTCTGCCGTGTTGTCTGTTGATCGACAAGCCCGTAATATTGCCCTGACCTAA 879 0.4858 MELALSLGDTPKPFSLPAKNDSVSFKIALGDDKRVSSDPPVQLDLLPSTPVLPSSRLRIPWLSDALGMERVTSEIPVRAVDDTDDGAALSSPNSAVSSFQMDFCFRNSRKSCEGASDEDDENGSTRKKLRLSKQQSVFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFFMQLPATTLTMCPSCERVATNTTTTGAAAAAATTNNYNNVASAPMATNNNSVSQISAVLSVDRQARNIALT* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1238 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 33 261 - -
Gso19g1238 292 CDD homeodomain 126 183 IPR001356 GO:0003677
Gso19g1238 292 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Gso19g1238 292 SUPERFAMILY Homeodomain-like 112 183 IPR009057 -
Gso19g1238 292 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Gso19g1238 292 SMART HOX_1 124 186 IPR001356 GO:0003677
Gso19g1238 292 Gene3D - 130 180 - -
Gso19g1238 292 PANTHER - 33 261 - -
Gso19g1238 292 Coils Coil 188 215 - -
Gso19g1238 292 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Gso19g1238 292 CDD bZIP 175 214 - -
Gso19g1238 292 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Gso19g1238 292 Pfam Homeobox associated leucine zipper 182 216 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1238 Gso-Chr19 40865235 40867155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1238 79 238 Homeobox Transcription Factor Family AT3G60390 60.753 9.59e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso19g1238 Homeodomain 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1238 K09338 - gmx:100810885 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1238 19 40865235 40867155 Gso3g1235 3 38000659 38002675 GST
Gso19g1238 19 40865235 40867155 Gso2g1458 2 28505571 28508183 PCT
Gso2g1458 2 28505571 28508183 Gso19g1238 19 40865235 40867155 PCT