Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1237 ATGGAGGAGGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAGCCCGAAACTGGGCCCATGAGCAATGAAGCTGTGAACTTGGACGATTGGATAGGGGAGCCTCTTCAGAGAATTAGCGAAGCTGTGAGGAGGGCACGGCAAAGGTGGAGATGGCGCCACCTTCCGCTACCGCATCCTGAATTTCATGCTCACTTTCCAACTGAAGCTACCCGGCATTTTCAAATACCACCCGAGGCTCGTAATATCTCCGTGGAATTGAACCACTTTTTGGTCAATTCTGGCAATGGAAGCGCCTTGCAGGCCGGCGAAGGGAGCGTGGCGGCCGAGGAGAGAATGGAGGAGGTGCCAAAGGCGTGTGACAATGTCAATGGTGTGGCAGAGGATGAGACTTCACAGAAGAAGGAGGATGTAGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCTAGGGATCCTGTTGTAACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTGTATAGGTGGTTGCATCTGCATTCGGATGCGAAGGAATGTCCAGTTTGTAAGGGAGAGGTGACACTTAAAAGTGTTACCCCAGTATATGGCCGTGGGAACAATGTCCGTGGTCCTGAGGAGGATTCTGCTCTTAAGATCCCTCCCAGGCCCCAAGCAAAGAGGGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTTGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATCTTACACGTGATTTGGTTCAGCCACCTGAACCGGATGCTGCCCGTGAAACGGCTGAGAGAACTACTTCCTTGCTAAGTAGGTTCTTGACTGCACGAGGGATGCGTAGAGAGCATCAGAATCTAGTGGCACCCCCAGAGGATGTAATGGGTTTGGCACAGAACAATGTTAATACTTCTGAGGCAGGGGATCCCCGGAGTAGGGTGCAGTCCCATTTGCTTCGAAGAACACAATCACATAGAGCAACACTTTCTACTCTTTCATCAGCACTAACTTCTGCCGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGGAACCAAGAACAACCTCCTCCTCCAGTTGATGACAGAGATTCTTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAGCTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCGTCTAGGAGGAGGAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCTAGGCGTAGACGTTTGAACTGA 1329 0.4906 MEEETSDAMNLDLNLGPGPEPETGPMSNEAVNLDDWIGEPLQRISEAVRRARQRWRWRHLPLPHPEFHAHFPTEATRHFQIPPEARNISVELNHFLVNSGNGSALQAGEGSVAAEERMEEVPKACDNVNGVAEDETSQKKEDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPVYGRGNNVRGPEEDSALKIPPRPQAKRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPPEPDAARETAERTTSLLSRFLTARGMRREHQNLVAPPEDVMGLAQNNVNTSEAGDPRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPPVDDRDSFSSIGAVINSESQLDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1237 442 PANTHER OS01G0830200 PROTEIN 13 442 - -
Gso19g1237 442 MobiDBLite consensus disorder prediction 1 25 - -
Gso19g1237 442 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Gso19g1237 442 MobiDBLite consensus disorder prediction 420 442 - -
Gso19g1237 442 Pfam Zinc finger, C3HC4 type (RING finger) 156 196 - -
Gso19g1237 442 SMART ring_2 156 196 IPR001841 -
Gso19g1237 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 442 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso19g1237 442 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Gso19g1237 442 MobiDBLite consensus disorder prediction 409 442 - -
Gso19g1237 442 CDD RING-HC_AtRMA_like 154 198 - -
Gso19g1237 442 SUPERFAMILY RING/U-box 151 209 - -
Gso19g1237 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 244 IPR013083 -
Gso19g1237 442 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1237 Gso-Chr19 40849557 40851881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1237 1 433 C3H Transcription Factor Family AT3G58030 54.425 4.14e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1237 K10666 - gmx:100811099 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1237 19 40849557 40851881 Gso3g1234 3 37987430 37989776 GST