Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1228 ATGTTTTCGTGGCTTGCAAGACTAGTTTCGTCGTGCTTGAGGCCTGTGAGGCGCTATGCCCGCATGAGCAAAGATGGTGATGATGATGATGATGGTGTTGATGAGTCTACTTCATCAGTTGAAGACTCTCTTCTGTGGCGTAGAGACCTTTTGAAACATTCTTGTGGTGAATTCTCCTTTGCTGTGGTTCAGGCCAATGAAGTTATTGAGGATCATAGTCAGGTCGAGATTGGCTCTGACGCCATCTTTGTTGGGGTTTATGATGGCCATGGTGGTCCTGAAGCTTCACGGTTCGTCAGAGATCACCTCTTCCAGCACCTAATGAGGATTGCTCAGGATAATGGAACTATCTCTGAAGAAATTCTCAGAGGTGCTGTTACTGCTACAGAGGATGGGTTTATGAAACTTGTTCATAGGAGTTATATGATAAAGCCTTTGATTGCATCAATTGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAAAGGGACTCTATATATCGCCAATCTTGGAGACTCCCGTGCCGTTGTTGGTTCTTTAGGTAGATCTAACAAGATCATTGCCGAGCAGCTGACTAGAGAGCACAATGCTTGTAGGGAGGAGATTAGACAAGAACTTAGGTCTTTGCATCCACAAGATTCACAAATTGTAGTAATGAATCGTGGAACATGGCGTGTCAAAGGCATCATCCAGGTATCGAGATCCATAGGAGATGCATATTTGAAGTGGCCGCAGTTCTCTCTCGATCCATCATTCCCACGTTTCCACATGCCTGAACCTATAACCCAACCTGTGCTAACAGCAGAACCATCTCTATGTTCAAGAGTTTTGCAGCCCCATGACAAATTTCTTATATTTGCATCTGATGGACTTTGGGAATACATGACAAATCAGCAAGCAGCCGAGATTGTTCAGAAGAACCCACGAAATGGGGTTGCAAGAAAACTTGTTAAGGCTGCTCTAAAGGAGGCAGCTAATAAAAGGAAAATGAAATATAAAGAGCTTCAGAAGATTGAGAAAGGAAACAGAAGGATTTTTCATGATGATATCACTGTGATTGTTGTCTTCATAGACCATGAGTTGCTCGGGAAGAAAATTACTGTGCCAGAGTTGTCCATCAGAGGGTTCATTGACTCGGCTGGACCGTCAAATTTTAAAAGTGTCCAGGAGTTTATGTGA 1176 0.4354 MFSWLARLVSSCLRPVRRYARMSKDGDDDDDGVDESTSSVEDSLLWRRDLLKHSCGEFSFAVVQANEVIEDHSQVEIGSDAIFVGVYDGHGGPEASRFVRDHLFQHLMRIAQDNGTISEEILRGAVTATEDGFMKLVHRSYMIKPLIASIGSCCLVGVIWKGTLYIANLGDSRAVVGSLGRSNKIIAEQLTREHNACREEIRQELRSLHPQDSQIVVMNRGTWRVKGIIQVSRSIGDAYLKWPQFSLDPSFPRFHMPEPITQPVLTAEPSLCSRVLQPHDKFLIFASDGLWEYMTNQQAAEIVQKNPRNGVARKLVKAALKEAANKRKMKYKELQKIEKGNRRIFHDDITVIVVFIDHELLGKKITVPELSIRGFIDSAGPSNFKSVQEFM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1228 391 PANTHER ALPHABET, ISOFORM E-RELATED 6 376 - -
Gso19g1228 391 Gene3D - 33 364 IPR036457 -
Gso19g1228 391 Pfam Protein phosphatase 2C 79 324 IPR001932 -
Gso19g1228 391 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Gso19g1228 391 CDD PP2Cc 58 356 IPR001932 -
Gso19g1228 391 ProSiteProfiles PPM-type phosphatase domain profile. 57 356 IPR001932 -
Gso19g1228 391 SMART PP2C_4 37 354 IPR001932 -
Gso19g1228 391 Coils Coil 187 207 - -
Gso19g1228 391 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 376 - -
Gso19g1228 391 SUPERFAMILY PP2C-like 63 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1228 Gso-Chr19 40773946 40777815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1228 1 384 PP2C-type Phosphatase Gene Family AT5G06750 68.123 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1228 K01102 - gmx:100806476 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1228 19 40773946 40777815 Gso2g1470 2 29138451 29143907 PCT
Gso19g1228 19 40773946 40777815 Gso10g0807 10 11838475 11839290 PCT
Gso2g1470 2 29138451 29143907 Gso19g1228 19 40773946 40777815 PCT
Gso10g0807 10 11838475 11839290 Gso19g1228 19 40773946 40777815 PCT