Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1222 ATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGCGGATTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCCGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAACACCTGCAGCACCTCCAGCATCAAGAAATGTTGCAGCTCTGCCTCCTGTACCAAATGGTTCCGCACCACCTGCCGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAGCTTGGCAAGCATATTGCTCCATCATTTGATGACCATCGCACCATGGGACCCACTGGAGTAGGTCGTCTTGCTGGTCGAATGGAGCCCCCTCCTGGCCCTGCTGCAAGTTTTGGGGCCAATGCCACAGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGCGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAAGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCACCTAAAACAACCCCAGGTGTTCCTGGCGCACCTGCCTCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTACAAAAGGGTCTTGCACGTTTGGAGATAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATCAGGAGTATGA 888 0.4786 MDTRKRGRPEPGFSLNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPASRNVAALPPVPNGSAPPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRTMGPTGVGRLAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPASHGSNFKTKLCENFTKGSCTFGDRCHFAHGAAELRKSGV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1222 295 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Gso19g1222 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Gso19g1222 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Gso19g1222 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Gso19g1222 295 MobiDBLite consensus disorder prediction 21 36 - -
Gso19g1222 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Gso19g1222 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Gso19g1222 295 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Gso19g1222 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gso19g1222 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gso19g1222 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Gso19g1222 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Gso19g1222 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Gso19g1222 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Gso19g1222 295 Gene3D - 94 131 - -
Gso19g1222 295 Gene3D - 260 293 - -
Gso19g1222 295 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Gso19g1222 295 SMART kh_6 167 237 IPR004087 GO:0003676
Gso19g1222 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Gso19g1222 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gso19g1222 295 MobiDBLite consensus disorder prediction 1 36 - -
Gso19g1222 295 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Gso19g1222 295 CDD KH-I 170 233 - -
Gso19g1222 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1222 Gso-Chr19 40726385 40729752 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso19g1222 KH_1 3.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1222 - - gmx:100803981 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1222 19 40726385 40729752 Gso3g1222 3 37876191 37879929 GST
Gso19g1222 19 40726385 40729752 Gso2g1479 2 29391859 29397095 PCT
Gso2g1479 2 29391859 29397095 Gso19g1222 19 40726385 40729752 PCT