Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1216 ATGGAGGGTTTGAAGAAGAGAAAGCTGGAGCTGGACGAAGCAGGCAACGGTGAATTGGCTTCCAAGGAAGAGCTTCGCTTCCTCATTGAACCTCTCGCTAAACCCCAGCTCGTCGATCTTCTTGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACATTGCGTGCTGCATTTCAAGAGCACGGAGAAATTGAGGAAGGAGCTGTGATCTTTGATAAAGTGACAGGAAAATCCCGTGGCTATGGATTTATAACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATTGATGGGAGATTGGCTGTCTGTAATCTAGCTTGTGAGAGTCTAAGCGGAACAAGTAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATTCTCCTTAACTATTTTGCGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAGGGATACAAATGAATCACGTGGTTTTGGCTTTGTCACATACAAGACAGCGGAGGCTGCAAAGAAGGCCATAGATGACGTAGAAAAGATGCTCGGGGGAAGGAATATAGTTGTAAAATATGCTGATTCCCACAAAGGTAAAACTGGCCAGCCGCCATTTCCTTCTGGAGTGGTTCCAATGGCACCCTTACCTATGAACCCAGGATACATGCAACCTGGAAAAGGTCATGTTGGTTCAGGGCCCCCAATCAATTACAGTTACCCCCAAACAGTAGCACCATATTCTGCATCTCCTTATCCAAACCCTCCTCCCACTGCACCCTCACTTTATCCAATACAATGGCAGATTCCTTATCCTCAAGTTTCTGCAAAGAAAGACCAACATGGGGATCCGCCTGCTGCTGTAGGAATGAACCCTTATTACTATCCCAAGCAATGA 1011 0.45 MEGLKKRKLELDEAGNGELASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDVEKMLGGRNIVVKYADSHKGKTGQPPFPSGVVPMAPLPMNPGYMQPGKGHVGSGPPINYSYPQTVAPYSASPYPNPPPTAPSLYPIQWQIPYPQVSAKKDQHGDPPAAVGMNPYYYPKQ* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1216 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Gso19g1216 336 SMART rrm1_1 158 230 IPR000504 GO:0003723
Gso19g1216 336 SMART rrm1_1 67 139 IPR000504 GO:0003723
Gso19g1216 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 227 IPR000504 GO:0003723
Gso19g1216 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Gso19g1216 336 Gene3D - 145 242 IPR012677 -
Gso19g1216 336 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 17 336 - -
Gso19g1216 336 CDD RRM_RBM24_RBM38_like 66 141 - -
Gso19g1216 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 166 IPR000504 GO:0003723
Gso19g1216 336 Gene3D - 57 144 IPR012677 -
Gso19g1216 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 17 336 - -
Gso19g1216 336 SUPERFAMILY RNA-binding domain, RBD 59 143 IPR035979 GO:0003676
Gso19g1216 336 MobiDBLite consensus disorder prediction 313 336 - -
Gso19g1216 336 SUPERFAMILY RNA-binding domain, RBD 151 249 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1216 Gso-Chr19 40651991 40656101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1216 149 268 C2H2 Transcription Factor Family AT2G19380 33.071 5.15e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1216 K12741 - gmx:100802911 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1216 19 40651991 40656101 Gso3g1214 3 37790038 37794187 GST