Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1215 ATGTTCCTCTTTCGAAAATTCAACGTTCATAGCCTCATCCTTAAACCCTGGCAAAACCCTAGGTTCCTGAGCACGAAGAAGAAACCCCCGAAATCCGGTACCAAATTCATCGGAAAAGCCGCCCTCAAAGAAGCCCAAGCCGCACTTCTCGAGTACCTCCACTCCACACGAAGCCTCAACATCGTCGACGCCGAAAACATGTGCAGAAACTCACCCTCCTTCCTCCACGACCTCCTCGCCAAATCCCAATCCCAAACCCTAACGCGGCACGTCGACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCACCACCACCACCACCAAACGCTCCATCTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGCGCCGGCCTCACCCCTCCCGAGTACGCGCCCTTTCTCCCGCGCGACATGATTTACCTAAACGACGACGCTTTGCTCATGGAGAATTACCATGCCCTCTGCAATTACGGCGTTCCCCGCACCAAGATGGGGAGGCTTTTCAAATTGACGCCTCAGTTGTTTCGTTACAAACCCGGCGTTTTGATCTCGAAGCTTCGGGATTACGAAAAGCTCGGTGTTGCGCGGAGGACTTTGGCGTGTGTGGTTGCTTCTAGCCCCTGCATTTTGGTTGGGGGTGTTGATGTTGGTTTTGTTAAGGTTGTGGAGAAGTTGAAGGGTGTTGTTGGAAAGGATGTTGATTGGATTGGGGAGAATTTGTTGGATATGTTGAGCGATCAGGGTTGTTGTGATTGGAGGATAGTGCTTCATGTTTTGTGTTTGCTTGATAGGGTTTATAGTGAGGAACAGTTGGGCGATTTTTTCATTCGTCACCCTAGTGTTGTTTTTGAGGACTCTGGAGGAAGTGTGTTGTCTCTGATTAACTTTTTGTTTAAATTTGGGTTGTCTCTGGACCAGGTTTCTCTCATGCTTCTCGAGTTTCCAAAGATTCGGGTCACGAAGTTTTTGTCCAACTTGAGGCAGTGTTTTCTGTTCTTGACCGAGATTGAGATGGAGGCATTGGAGATTGGGGAGATTTTGCAGTCTCAGTGCTTGGTGTTGGGTTCCTTCACTTTGAAGAAAACGATTACTTTGCTTACTAACTTGAATGCTGGCAAGAAGCGGTTGTGTAGAGTTGTGAGGGATGATCCTCTGGTAATGAAGAGTTGGGCTCTGGGAAGGAGGATTCAGCCTTTCGTGAACTCATATTTGGAGTATGAATCAAAGGAGCAGAAGAAGAAGTTCATGCTCAAGTTGGGGTATGTGGAGAACTCAAAGAAGATGAATGAGACGATTAGGTTGTTCAGAGGTAAGGGAGCTGAGCTTGAGGAGAGACTTGATTTTATTGTTAAGGCTGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGAGATTCCCCGCGGATTCTTAATCAGACAACCGATAGGATCAACATGAAAATTGAGAATCTTGTGAGTTTAGGATATTCTATATCGGATTTAGCTAGTTTTCCTTCATTTCTTTCCTATTCACCTCGAAGGGTTAAGCTTCGGTTTTTGATGTATGATTGGCTCAAAGAGCATGGAGCTGTAGAAGCGGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGATAAAGCGTTTGAGAAGCTGTATGTGAAGCGCCATCCATCTGGCCTTCAAGTTTGGCAGGATTTGAAGGCACAGATTTCTTCTAAGTTTTAG 1731 0.4697 MFLFRKFNVHSLILKPWQNPRFLSTKKKPPKSGTKFIGKAALKEAQAALLEYLHSTRSLNIVDAENMCRNSPSFLHDLLAKSQSQTLTRHVDNNNNNNSSSSSSTTTTTKRSISRYLRYHPINEFEPFFESAGLTPPEYAPFLPRDMIYLNDDALLMENYHALCNYGVPRTKMGRLFKLTPQLFRYKPGVLISKLRDYEKLGVARRTLACVVASSPCILVGGVDVGFVKVVEKLKGVVGKDVDWIGENLLDMLSDQGCCDWRIVLHVLCLLDRVYSEEQLGDFFIRHPSVVFEDSGGSVLSLINFLFKFGLSLDQVSLMLLEFPKIRVTKFLSNLRQCFLFLTEIEMEALEIGEILQSQCLVLGSFTLKKTITLLTNLNAGKKRLCRVVRDDPLVMKSWALGRRIQPFVNSYLEYESKEQKKKFMLKLGYVENSKKMNETIRLFRGKGAELEERLDFIVKAGLDYEVVCKMIRDSPRILNQTTDRINMKIENLVSLGYSISDLASFPSFLSYSPRRVKLRFLMYDWLKEHGAVEAGLALSTIIACSDKAFEKLYVKRHPSGLQVWQDLKAQISSKF* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1215 576 SMART mt_12 317 348 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 SMART mt_12 209 241 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 SMART mt_12 469 499 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 SMART mt_12 174 204 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 SMART mt_12 500 533 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 Pfam mTERF 276 412 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 Pfam mTERF 435 551 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 569 - -
Gso19g1215 576 PANTHER CGI-12 PROTEIN-RELATED 28 569 IPR003690 GO:0003690|GO:0006355
Gso19g1215 576 Coils Coil 565 576 - -
Gso19g1215 576 Gene3D Transcription termination factor 3, mitochondrial 299 568 IPR038538 -
Gso19g1215 576 MobiDBLite consensus disorder prediction 89 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1215 Gso-Chr19 40648540 40651128 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso19g1215 mTERF 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1215 - - gmx:100807690 1077.39