Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1213 ATGGCTTCAGACGCCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTTGGTCTTGCTACTCCAGCCACCTCTCTTACTTCTTCTTCTTCTTCTTCTTCTGCTGCTACTGTTACTTCTTCTTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAACCTCCCAGGTGTCAAGTTGAAGGGTGCAAAGTAGATCTGAGTGATGCAAAAGCTTACTATTCTAGACACAAGGTCTGTGGCATGCACTCTAAATCCCCTTCAGTCATTGTTGCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGTAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCAACAAGCTCCCTCTTAACCTCTCGCTATGCCAGACTTTCTTCGTCTGCTTTTGATAATAGTGGCAGAGGTAGCAACTTTCTGATGGAATTGACTTCATACCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCTGAGCTAGCTCCTGGAAATCAAACCTCCACACTTAGCTGGAATGGCAACTCAGAGACATCATCTGACCTTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTCGCCAGCCCGGGACATCCTCCAGGGGAAAGTTACATTGGGGTCACCGACACGAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAGTAACATGATAAATTTCAACGGGACACCCTTGACACAACTTGCTGCATCATCTCATGGTGCATCAATCCATCAACTTCCAAATACCTCGTGGTTTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCCGAGGTGGTCCCTGATCTAGGTCTCGGTCAGATTTCACAGCCTCTCAATAGCCAACTTCATGGTGAGCTGGACCTGTCCCAACAGGGCAGGAGGCATTATATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA 1080 0.4667 MASDAKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSSSSSSSAATVTSSSSSRKGRGGSVQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPSVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPTSSLLTSRYARLSSSAFDNSGRGSNFLMELTSYPKLSLRNSLPTPRSSELAPGNQTSTLSWNGNSETSSDLFLQGSVGGTSFASPGHPPGESYIGVTDTSCALSLLSNQTWGSRNTAPSLGLSNMINFNGTPLTQLAASSHGASIHQLPNTSWFFKGIDSGNCSPEVVPDLGLGQISQPLNSQLHGELDLSQQGRRHYMDLEQSRAYESAHWSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1213 359 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Gso19g1213 359 Pfam SBP domain 70 143 IPR004333 GO:0003677
Gso19g1213 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 359 - -
Gso19g1213 359 MobiDBLite consensus disorder prediction 33 69 - -
Gso19g1213 359 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Gso19g1213 359 MobiDBLite consensus disorder prediction 183 207 - -
Gso19g1213 359 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Gso19g1213 359 MobiDBLite consensus disorder prediction 33 60 - -
Gso19g1213 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 359 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1213 Gso-Chr19 40621840 40626715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1213 16 359 SBP-box Gene Family AT2G42200 43.817 3.49e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso19g1213 SBP 8.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1213 19 40621840 40626715 Gso3g1212 3 37762580 37767130 GST