Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1210 ATGAGTCTCCAAAGCAACCTCTTATCTCTTTTGGTTGCCTTGGCCGCAGTTTTTGCATCTTTGAATCTGATAAATCCAATTCCACAGTTTCTCAATAACTTCACATATTTTAGTCTCACAACCTTGTCACCATCATCTGCATACTTGGCAAAACCTTTAACTTGGAACTTCTGGAGAGACCATCATCACAAGAAACACCCTGACAGTGGCAATACCGATTCTATTTGTGATGATTTTCCACCGGGAATTCCACCTCCAAATACCAATACCACTTCCTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCGGCCGTGAATGCAGTTCCGGATTTTAGTGTCAAAAGAACCATAATATGGATAAACAGTGGCATGTACTATGAGAAGGTGTTGGTGCCTAAAACCAAACCCAACATTACATTTCAAGGACAAGGCTACACGTCAACTGCAATTGCATGGAATGATACCGCATTGTCCGCGAATGGAACATTTTATAGTGGCTCTGTACAAGTTTTCGGCTCCAATTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCGCCAATGCCCAGTCCTGGGGCCGTAGGGGCACAAGCAGTAGCTATTAGAGTATCGGGAGATCAATCTGAATTTAGGGGTTGTGGATTCTTCGGAGCCCAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTACATCCAAGGCTCCATTGACTTTATATTCGGCAATGCAAGGTCACTCTACGAGAATTGTGAAATAGTGTCTATAGCGAACCCGGTACCTGCGGGACAAAAGAGCATAAATGGTGCAGTTACAGCTCATGGTAGAGTTTCAGGGGATGAAAACACAGGATTTGCATTTGTGAACAGTACAATAGGAGGAAACGGCAGGATATGGTTGGGTCGGGCATGGAGACCTTACTCTCGTGTTGTTTTTGCCTTCTCAATAATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAACGACCCTTCAAGAGATCAGACTATCTTCTATGGAGAATACAATTGCTCGGGGCCTGGGGCTAATACGAACTTCAGGGCACCTTATGTACAGAAATTAAATGAAACACAAGCTTTGGCATTCCTCAACACAAGTTTTATTGATGGCGACCAATGGTTGGAAACTTCCAAATAA 1188 0.4268 MSLQSNLLSLLVALAAVFASLNLINPIPQFLNNFTYFSLTTLSPSSAYLAKPLTWNFWRDHHHKKHPDSGNTDSICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRTIIWINSGMYYEKVLVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFYSGSVQVFGSNFIAKNISFMNLAPMPSPGAVGAQAVAIRVSGDQSEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCEIVSIANPVPAGQKSINGAVTAHGRVSGDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVVFAFSIMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGANTNFRAPYVQKLNETQALAFLNTSFIDGDQWLETSK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1210 395 PANTHER PECTINESTERASE 8-RELATED 6 393 - -
Gso19g1210 395 SUPERFAMILY Pectin lyase-like 93 392 IPR011050 -
Gso19g1210 395 Pfam Pectinesterase 96 388 IPR000070 GO:0030599|GO:0042545
Gso19g1210 395 ProSitePatterns Pectinesterase signature 2. 242 251 IPR033131 -
Gso19g1210 395 Gene3D - 87 395 IPR012334 -
Gso19g1210 395 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1210 Gso-Chr19 40593965 40596455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1210 65 394 Carbohydrate Esterase AT1G05310 74.242 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1210 - - gmx:100806629 786.949