Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1206 ATGGCTTCTTCAAAGACCACCAACCCAACAACAACTACTACACAATTGGAACCACTCCCACCACCTCAACAACGCCATCCTCCTCCTCCTCATCATCAGTTGCAACAACACCACCACCACCACCATCATCATCAACAAATTCATGACCATCATCAAATTTCTTTTGGAATGATGCAATCCTCTTCTTCATTTTCCTCTATCCCCGGAAACTACCTAAGCAAGGATTCCGGAGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCAGACCCTTCTAGTGTTCAAGACCAAAGACAAAACTCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCCTCTAAGCCTATGCATGTAGAGCCATCATCATCCAAGGCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGGCCATCAGAGCCGTCGATGGAGTTGGCCAACCCTCGAAACGAAACTGCTTCTGCCCCTCAGCCACCCAAACCTGTCAAGCGAGAGAGCAACCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTGAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGCGCACTTTTGGGTGGAGAGCAAGGCCTTCCTGTCACTATGAATACTATTAGCACGGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCAAGAGGAGCACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAAAACGAGCTTAGACTGTTTGTGGACAATTGTTTGGCGCATTATGATCAAGTGATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCACGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGGCCATCTGAACTCATCAAGATTATTGTGCGTCAAATTGAGCCTCTCACGGAGCAACAAATATTGGGCATATGTGGATTGCAACAATCTACACAAGAAGCAGAAGAGGCTCTCTCCCAAGGGCTCGAGGCTCTTAATCAATCTCTCTCAGACACTATAACATCAGATTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTAGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCTGATAATCAGAGGCACCAAACCATTCACCGTCTGCACCAGATCCTAACAACGCGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCTGAGTACTTCCATCGTCTTCGAGCCCTCAGTTCTTTGTGGCTGGCACGCCCTCGCCAAGAATAG 1473 0.4732 MASSKTTNPTTTTTQLEPLPPPQQRHPPPPHHQLQQHHHHHHHHQQIHDHHQISFGMMQSSSSFSSIPGNYLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKAKANIELVSPQTSGSKRPSEPSMELANPRNETASAPQPPKPVKRESNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGMFLGGGALLGGEQGLPVTMNTISTEAAMFDVEYARWQEEHHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGTWKTPAERCFMWIGGFRPSELIKIIVRQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNQRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1206 490 MobiDBLite consensus disorder prediction 97 116 - -
Gso19g1206 490 MobiDBLite consensus disorder prediction 97 202 - -
Gso19g1206 490 ProSiteProfiles DOG1 domain profile. 272 486 IPR025422 GO:0006351|GO:0043565
Gso19g1206 490 SUPERFAMILY Leucine zipper domain 199 241 IPR046347 GO:0003700|GO:0006355
Gso19g1206 490 Coils Coil 218 245 - -
Gso19g1206 490 MobiDBLite consensus disorder prediction 135 166 - -
Gso19g1206 490 MobiDBLite consensus disorder prediction 1 50 - -
Gso19g1206 490 MobiDBLite consensus disorder prediction 1 19 - -
Gso19g1206 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 202 217 IPR004827 GO:0003700|GO:0006355
Gso19g1206 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 197 241 IPR004827 GO:0003700|GO:0006355
Gso19g1206 490 MobiDBLite consensus disorder prediction 175 202 - -
Gso19g1206 490 Pfam bZIP transcription factor 199 232 IPR004827 GO:0003700|GO:0006355
Gso19g1206 490 Gene3D - 198 248 - -
Gso19g1206 490 Pfam Seed dormancy control 290 364 IPR025422 GO:0006351|GO:0043565
Gso19g1206 490 SMART brlzneu 195 268 IPR004827 GO:0003700|GO:0006355
Gso19g1206 490 MobiDBLite consensus disorder prediction 31 48 - -
Gso19g1206 490 PANTHER TRANSCRIPTION FACTOR TGA9 86 489 - -
Gso19g1206 490 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 86 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1206 Gso-Chr19 40531168 40538533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1206 69 490 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.914 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g1206 DOG1 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1206 K14431 - gmx:100799713 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1206 19 40531168 40538533 Gso3g1205 3 37689236 37696456 GST