Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1203 ATGGCTACATACGCTGCGATGAAGCCCACAAAGCCCGGGTTGGAGGAGTCCCAAGAACAGATCCACAAGATAAGGATCACCCTTTCCTCCAAGCACGTCAAAAACCTCGAGAAGGTTTGTGCGGATTTGGTTCGCGGTGCAACGGATAAGAGACTCAGGGTGAAGGGACCTGTTAGGATGCCCACTAAGGTTCTTCACATCACTACCAGGAAATCACCCTGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTAGGGTGCACAAGAGAGTGATTGACCTCTACAGTTCCCCAGATGTGGTTAAGCAGATTACCTCTATCACGATCGAACCTGGTGTGGAGGTTGAGGTGACCATTGCAGATGCTTGA 372 0.5 MATYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGATDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1203 123 ProSitePatterns Ribosomal protein S10 signature. 47 62 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso19g1203 123 SMART Ribosomal_S10_2 25 119 IPR027486 -
Gso19g1203 123 Pfam Ribosomal protein S10p/S20e 25 119 IPR027486 -
Gso19g1203 123 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 3 122 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso19g1203 123 PRINTS Ribosomal protein S10 family signature 23 36 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso19g1203 123 PRINTS Ribosomal protein S10 family signature 58 73 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso19g1203 123 PRINTS Ribosomal protein S10 family signature 80 94 IPR001848 GO:0003735|GO:0005840|GO:0006412
Gso19g1203 123 SUPERFAMILY Ribosomal protein S10 23 120 IPR036838 -
Gso19g1203 123 TIGRFAM uS10_euk_arch: ribosomal protein uS10 22 120 IPR005729 GO:0003735|GO:0006412|GO:0015935
Gso19g1203 123 Gene3D Ribosomal protein S10 domain 7 122 IPR036838 -
Gso19g1203 123 PANTHER RIBOSOMAL PROTEIN S10-RELATED 3 122 - -
Gso19g1203 123 Hamap 30S ribosomal protein S10 [rpsJ]. 21 120 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1203 Gso-Chr19 40520461 40522281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1203 1 123 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 88.710 3.01e-76 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1203 K02969 - gmx:100306473 247.284