Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1197 ATGGATTCGAATTCGCGCTACCAAGTTCAGCAGCAACACCAACACAATTCTGGGTTACTTCGATTTCGTTCTGCCCCTCCCGCAAATCTCAAACAACAAGGCGAAGCTGCCAATAATAATGGGAGCGCGTGGGAGGGTTCTGAACCGCTTTTGAGATTCTTGAATTCCGGGGACACCCATGATACGACGTCGTCGCCTACCTTACGAGAATTCGTGGATAATAAGGTTTCTAATAATAGTAAACCTGCGAAGGAGTCATCATCACCTCTGAGTCGCATGAATTCCCAACAGGGTTATAGTACTTCTATGTTACCCTCTCGGAGTACTGTAACTTCAGCTATGATGTTGGGTTCTATGGGAAAGAATCAGAGTGCCAAAAGCTTTGATTCCAATCTTCTCAGGCAAAGTAGCTTCCCTGCTGGCCATTTCTCTAACAACATCTCCTTTCAGAACGGGTATGATACTATGAAAGGTGTTGGAAACTATAGTGGGGTCAATGGCAATGATGGTGAACTTAGTCTATCTATGAACAGAATGAAGAATCAAATAAGCTTCTCATCAATAAGTCCTTCTTCTTCCTTGGGAGTGCTATCACCAACTTCCAAAATAGGCACGGAGGGTATTAGGGTAACTAGCACTGAGGATGGGAGGCAGGGAGGGAGCAATGGTGATGCTCGATATTTTGGCCCTGGATTCTCCTATGCTTCTTGGAATGAGCCTTCACACCACAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTCTGATTCTCAGGATGGAGAACTAGGAAATCAAGTTCAAACACTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGATATGTTTGCTATGGATAGTTTGCTTCAGTTTTCAGATTCTGTTCCTTGTAAAATCAGAGCTAAGAGAGGCTTTGCTACACATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAAGTCGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGACAAGCAAACTAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAGATCTTCAGAAAGAATTCAAGACTCTGAACGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCAAGTTGCTTGA 1152 0.4332 MDSNSRYQVQQQHQHNSGLLRFRSAPPANLKQQGEAANNNGSAWEGSEPLLRFLNSGDTHDTTSSPTLREFVDNKVSNNSKPAKESSSPLSRMNSQQGYSTSMLPSRSTVTSAMMLGSMGKNQSAKSFDSNLLRQSSFPAGHFSNNISFQNGYDTMKGVGNYSGVNGNDGELSLSMNRMKNQISFSSISPSSSLGVLSPTSKIGTEGIRVTSTEDGRQGGSNGDARYFGPGFSYASWNEPSHHKRQRSSNDELLSDSQDGELGNQVQTLSHHLSLPRTSSDMFAMDSLLQFSDSVPCKIRAKRGFATHPRSIAERVRRSRISERIRKLQELVPNMDKQTSTAEMLDLAVDYIKDLQKEFKTLNDKRAKCKCINMQKSEADQVA* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1197 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 375 - -
Gso19g1197 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Gso19g1197 383 MobiDBLite consensus disorder prediction 238 259 - -
Gso19g1197 383 PANTHER TRANSCRIPTION FACTOR BHLH130 11 375 - -
Gso19g1197 383 Gene3D - 307 379 IPR036638 GO:0046983
Gso19g1197 383 MobiDBLite consensus disorder prediction 205 225 - -
Gso19g1197 383 MobiDBLite consensus disorder prediction 1 19 - -
Gso19g1197 383 Pfam Helix-loop-helix DNA-binding domain 311 356 IPR011598 GO:0046983
Gso19g1197 383 SMART finulus 311 361 IPR011598 GO:0046983
Gso19g1197 383 MobiDBLite consensus disorder prediction 1 105 - -
Gso19g1197 383 MobiDBLite consensus disorder prediction 56 105 - -
Gso19g1197 383 MobiDBLite consensus disorder prediction 31 45 - -
Gso19g1197 383 MobiDBLite consensus disorder prediction 240 254 - -
Gso19g1197 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 371 IPR036638 GO:0046983
Gso19g1197 383 MobiDBLite consensus disorder prediction 205 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1197 Gso-Chr19 40472880 40476573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1197 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.409 6.40e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1197 HLH 6.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1197 - - gmx:100796534 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1197 19 40472880 40476573 Gso3g1198 3 37652011 37655674 GST