Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1194 ATGGACCAAGCTCCGGGAGGATTGCGCGGATCCGTTCACCACGGCGCCACGCTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGACTCATGGCGCCGGCGCCGGAAAACGCGAGCTCGTTCACCGCGCTGCTTGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCTGACAGCGCTCGGAAACCGCCTAATTGCCATGTCAGCGCGAACCAGAAACCCTACCTGCTCAATTCTTTCGGCAGCAATTTGACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGCGAGAACTCGCCGCCTCCGCCGGGGGAGGCGCGCCTGATTCCAGCAGGAACCGGTTCGACTTTGGACAGAGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGCTGGGTTGCATTTCGGATCCCGCGGTTGAAAACAACATTCAGAGGACCGCCAAGAGAAAGGAGCGAGAGAAGAAGGCTAAAGGATCGTCGAAGAAGCGTAAGAGCGCCGCCGATGAGACATCCGGTGACGGCGAGAAGCTTCCCTACGTCCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATGGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCATCTCTAGTGGATAGTAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCAATGGCAACCGGCAGCATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCATCGGCAAACTCAGCGTCTCTGCACTTAAATCAATTGAAGATGGAGCTCTGA 1101 0.5377 MDQAPGGLRGSVHHGATLESIQFNEEIQGLMAPAPENASSFTALLELPPTQAVELLHSPESDSARKPPNCHVSANQKPYLLNSFGSNLTFPSNAALIERAAKFSVFAGENSPPPPGEARLIPAGTGSTLDRVKNEPQETDSNPCSSSRLGCISDPAVENNIQRTAKRKEREKKAKGSSKKRKSAADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRMDFSLDSLLATDGASLVDSNLPSMVTPLMWPEIPLNGNRQHYQQQWQLDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHLNQLKMEL* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1194 366 Coils Coil 246 266 - -
Gso19g1194 366 Pfam Helix-loop-helix DNA-binding domain 210 257 IPR011598 GO:0046983
Gso19g1194 366 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 366 IPR024097 GO:0006355
Gso19g1194 366 MobiDBLite consensus disorder prediction 180 197 - -
Gso19g1194 366 MobiDBLite consensus disorder prediction 138 160 - -
Gso19g1194 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 256 IPR011598 GO:0046983
Gso19g1194 366 SMART finulus 212 262 IPR011598 GO:0046983
Gso19g1194 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 275 IPR036638 GO:0046983
Gso19g1194 366 CDD bHLH_AtBPE_like 196 281 - -
Gso19g1194 366 MobiDBLite consensus disorder prediction 108 197 - -
Gso19g1194 366 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 366 - -
Gso19g1194 366 Gene3D - 203 276 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1194 Gso-Chr19 40426946 40435958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1194 6 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.320 1.15e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1194 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1194 - - gsj:114400298 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1194 19 40426946 40435958 Gso3g1196 3 37599588 37608091 GST