Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1191 ATGGCTACTACCACATTCTGTACATACCTATTCCTTCTCTCTGTGTACCTTTCAATCTTCATTAATCTTAGTTCATCTTCTTCAGAAGGTAATATTCTTCTCTCCTTCAAGGCCTCCATTGAAGATTCTAAGAGGGCCTTGTCTAGCTGGTCCAACACTTCCTCAAACCACCACTGTAACTGGACTGGAATCACTTGCTCCACCACACCTTCACTTTCAGTAACTTCTATCAACCTTCAAAGCTTAAACCTTTCTGGAGATATCTCATCTTCAATATGTGACCTTCCAAATCTGTCTTATCTTAACCTTGCTGATAACATCTTCAACCAACCCATCCCTCTTCATCTCTCTCAGTGCAGTTCCTTGGAGACTTTGAATCTCAGTACCAACCTCATATGGGGCACTATCCCGTCTCAGATTTCTCAGTTTGGTTCATTGAGAGTGCTTGATTTGAGCAGAAACCACATAGAGGGAAACATTCCTGAAAGCATAGGCTCCTTGAAGAACCTCCAAGTTCTCAACTTGGGAAGCAACTTGCTTTCAGGTAGTGTACCTGCTGTCTTTGGAAATCTAACTAAACTTGAAGTCCTTGATTTGTCTCAGAATCCTTACTTGGTGAGTGAGATTCCTGAGGACATTGGTGAGCTTGGAAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGGAATTCCAGATTCTCTGGTGGGCATTGTCAGCTTGACCCATTTGGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCAAAGGCTCTACCGTCTTCTCTCAAGAACCTGGTTTCATTAGATGTTTCACAAAACAAGCTTTTGGGGGAATTTCCAAGTGGCATATGCAAGGGACAAGGCCTTATTAACCTCGGTCTCCACACAAATGCCTTCACTGGTTCAATACCCACCTCCATTGGTGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGGTTTCTCTGGAGATTTCCCCCTTGGATTGTGGTCATTACCTAAAATTAAGCTCATCAGAGCTGAAAACAACAGATTCTCAGGGCAGATACCTGAGTCAGTTTCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAACAACAGCTTTGCTGGTAAAATTCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTCAACCGTTTCTATGGTGAACTTCCTCCAAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTGAAATCCCAGAGCTCAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGACAACAGTCTAACAGGAGACATACCCTCTTCCCTTGCTGAGCTACCTGTGCTTACTTACCTTGATCTTTCACATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCAGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCTAACTCTTGCTCTGATGACATGCCAAAACACCACATTGGTAGCATCACAACCTTAGCATGTGCCCTCATCTCTTTAGCCTTTGTTGCTGGAACTGCCATTGTTGTTGGTGGGTTTATTTTGAATAGGAGATCTTGCAAGAGTGATCAAGTAGGGGTTTGGCGCTCGGTGTTCTTCTATCCACTCAGAATTACTGAGCATGATCTGCTTACAGGGATGAATGAGAAGAGTTCAATGGGAAATGGTGGGATTTTTGGTAAAGTTTATGTTTTGAATTTGCCTAGTGGTGAACTAGTAGCTGTGAAGAAGTTGGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAGGCTGAGGTCAAGACTTTGGCAAAAATCAGGCATAAGAATGTTGTTAAAATTCTTGGGTTCTGCCACTCTGATGAGTCAGTGTTTCTCATTTATGAATACTTGCATGGAGGGAGCTTAGAGGATTTGATTTCTAGTCCGAATTTTCAGTTGCAGTGGGGAATTCGATTAAGAATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGCAAACTTTGAGCCAAAACTCACAGATTTTGCTCTTGATCGAGTTGTGGGAGAAGCTGCTTTTCAATCAGTTTTGAACTCTGAAGCAGCATCTTCATGTTACATTGCACCAGAAAATGGCTACACTAAGAAAGCAACTGAACAATTGGATGTCTACAGCTTTGGTGTGGTATTGCTAGAGCTAGTGAGTGGCAGGCAAGCAGAGCAAACAGAGTCAAATGACTCACTTGACATTGTGAAGTGGGTCAGAAGGAAAGTGAATATCACTAATGGGGTGCAACAAGTTCTTGACCCTAAAATATCACACACTTGTCACCAAGAAATGATTGGAGCTTTAGACATAGCGCTTCATTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTCTAAGAGGCCTTCACTCCTTGGAGTCAAGAACTTGCATTGCAAATTTGCATGAACCAAATGAGGAACCCTCCATTCCAGTCTGA 2658 0.4255 MATTTFCTYLFLLSVYLSIFINLSSSSSEGNILLSFKASIEDSKRALSSWSNTSSNHHCNWTGITCSTTPSLSVTSINLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLSQCSSLETLNLSTNLIWGTIPSQISQFGSLRVLDLSRNHIEGNIPESIGSLKNLQVLNLGSNLLSGSVPAVFGNLTKLEVLDLSQNPYLVSEIPEDIGELGNLKQLLLQSSSFQGGIPDSLVGIVSLTHLDLSENNLTGGVPKALPSSLKNLVSLDVSQNKLLGEFPSGICKGQGLINLGLHTNAFTGSIPTSIGECKSLERFQVQNNGFSGDFPLGLWSLPKIKLIRAENNRFSGQIPESVSGAVQLEQVQLDNNSFAGKIPQGLGLVKSLYRFSASLNRFYGELPPNFCDSPVMSIVNLSHNSLSGEIPELKKCRKLVSLSLADNSLTGDIPSSLAELPVLTYLDLSHNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNSCSDDMPKHHIGSITTLACALISLAFVAGTAIVVGGFILNRRSCKSDQVGVWRSVFFYPLRITEHDLLTGMNEKSSMGNGGIFGKVYVLNLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLEDLISSPNFQLQWGIRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEAAFQSVLNSEAASSCYIAPENGYTKKATEQLDVYSFGVVLLELVSGRQAEQTESNDSLDIVKWVRRKVNITNGVQQVLDPKISHTCHQEMIGALDIALHCTSVVPEKRPSMVEVLRGLHSLESRTCIANLHEPNEEPSIPV* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1191 885 SUPERFAMILY L domain-like 207 520 - -
Gso19g1191 885 Gene3D Phosphorylase Kinase; domain 1 584 669 - -
Gso19g1191 885 PRINTS Leucine-rich repeat signature 243 256 - -
Gso19g1191 885 PRINTS Leucine-rich repeat signature 456 469 - -
Gso19g1191 885 Gene3D Ribonuclease Inhibitor 243 527 IPR032675 -
Gso19g1191 885 PANTHER - 6 871 - -
Gso19g1191 885 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Gso19g1191 885 SUPERFAMILY Protein kinase-like (PK-like) 602 861 IPR011009 -
Gso19g1191 885 ProSiteProfiles Protein kinase domain profile. 594 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1191 885 Gene3D Transferase(Phosphotransferase) domain 1 670 878 - -
Gso19g1191 885 Pfam Protein kinase domain 595 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1191 885 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Gso19g1191 885 CDD STKc_IRAK 599 862 - -
Gso19g1191 885 SUPERFAMILY L domain-like 27 292 - -
Gso19g1191 885 Pfam Leucine Rich repeats (2 copies) 242 282 IPR025875 -
Gso19g1191 885 Gene3D Ribonuclease Inhibitor 187 240 IPR032675 -
Gso19g1191 885 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 871 - -
Gso19g1191 885 Pfam Leucine rich repeat 433 492 IPR001611 GO:0005515
Gso19g1191 885 Pfam Leucine rich repeat 145 203 IPR001611 GO:0005515
Gso19g1191 885 ProSiteProfiles Leucine-rich repeat profile. 145 167 IPR001611 GO:0005515
Gso19g1191 885 SMART LRR_typ_2 265 289 IPR003591 -
Gso19g1191 885 SMART LRR_typ_2 143 166 IPR003591 -
Gso19g1191 885 SMART LRR_typ_2 191 216 IPR003591 -
Gso19g1191 885 SMART LRR_typ_2 167 190 IPR003591 -
Gso19g1191 885 SMART LRR_typ_2 240 263 IPR003591 -
Gso19g1191 885 SMART LRR_typ_2 456 479 IPR003591 -
Gso19g1191 885 SMART LRR_typ_2 95 119 IPR003591 -
Gso19g1191 885 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1191 Gso-Chr19 40366396 40370027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1191 33 865 Receptor kinase-like Gene Family AT5G06940 65.871 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso19g1191 Pkinase 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1191 - - gmx:100794428 1683.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1191 19 40366396 40370027 Gso3g1193 3 37542067 37545840 GST