Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1189 ATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGGAAGCTAAGGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTCGGGGATGAAGAGAAGCGAGCTCTCTATGATCAGACTGGTTGTGTTGATGATGCTGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTTAGAACAATGTACAAGAAGGTGACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATCGGGGATCTGACTCAGAGAAAAATGATTTGATTGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTTCAGGAGAACTAAAGGCAAAAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCTGAAATCAAACCGCCCACAAATCCTTTGAGGAGGAGGGAAAAGTCAAATAAGCAGTCAGAGACAGATCTATGTGCAATCATAGCACAACGCCGAAATGAGAGAAAAGGGCAGTTTGATTTAATGTTCTCATCTCTAGTTTCAAAATATGGTGGTGGTGATACGCCAGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGAGAAAGCTGGAGACTGGTAGATCCTCTAAAAACTCGAAGCAATCAAAGCGAAAGTAA 837 0.4325 MAQKKKARVSDDEEMEVQHDQTSLYQVLGVERTASQQEIKKAYYKLALRLHPDKNPGDDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLQEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIASGELKAKKAYQKWAKEVSEIKPPTNPLRRREKSNKQSETDLCAIIAQRRNERKGQFDLMFSSLVSKYGGGDTPEPSEEEFEATRRKLETGRSSKNSKQSKRK* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1189 278 Gene3D DnaJ domain 7 102 IPR036869 -
Gso19g1189 278 PRINTS DnaJ domain signature 25 43 IPR001623 -
Gso19g1189 278 PRINTS DnaJ domain signature 43 58 IPR001623 -
Gso19g1189 278 PRINTS DnaJ domain signature 61 81 IPR001623 -
Gso19g1189 278 PRINTS DnaJ domain signature 81 100 IPR001623 -
Gso19g1189 278 SUPERFAMILY Chaperone J-domain 19 97 IPR036869 -
Gso19g1189 278 MobiDBLite consensus disorder prediction 253 271 - -
Gso19g1189 278 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 274 - -
Gso19g1189 278 MobiDBLite consensus disorder prediction 196 215 - -
Gso19g1189 278 SMART dnaj_3 22 81 IPR001623 -
Gso19g1189 278 MobiDBLite consensus disorder prediction 198 213 - -
Gso19g1189 278 CDD DnaJ 25 78 IPR001623 -
Gso19g1189 278 Pfam DnaJ domain 24 86 IPR001623 -
Gso19g1189 278 ProSiteProfiles dnaJ domain profile. 23 89 IPR001623 -
Gso19g1189 278 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 274 IPR042977 -
Gso19g1189 278 MobiDBLite consensus disorder prediction 243 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1189 Gso-Chr19 40335690 40338607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1189 25 86 C2H2 Transcription Factor Family AT1G74250 42.424 8.61e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1189 K09529 - gmx:100793909 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1189 19 40335690 40338607 Gso2g1536 2 32416004 32419210 PCT
Gso2g1536 2 32416004 32419210 Gso19g1189 19 40335690 40338607 PCT