Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1188 ATGGAGACAGAGAACGGTGACACCAGGTCCAAAAAGATGGAAGAGTATGAAGTCATAGAGCAAATTGGAAGAGGAGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTAGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATATATTGTGGACTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACCGGCTATTGTGAAGGAGGTGACATGGCAGAGAACATAAAGAAAGCCCGAGGGTCATTTTTTCCTGAGGAGAAGGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCATTCCAATCGTGTGATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGGTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCTTTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCAGAACATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTACGCTGTCATAATGCATCATCTAATGTTCTTCCTGTATATCCCCTAGTTAATCCAAAGGATAAAGCAAGAAGACCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAGGTTTAGTAAATTGTTTGGAACGGATTCATCCAATTGAGGGAAATGCAGATATACAGATAAGCAATCTTCCTAATGATGTGGTAACAATTTCAACCAGTGCAGAAGACAATCTTGAGACCAGGATGGCTAATCTTACCAGCTACATAGTTGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAATGACTAACAATGAGATCTCTTCAAAGAGTACACAAGATTCTCTGCATGAAGAACAAAGATTTGCTGCTAAACATTTTCATAAATTAGAAGACGACGACATAAATGCGGTGACTGCAGAAGTTGAAGATGCTTCTTGCAATGGAGGTTTGGATAATGCTGAAGCACAGAGGGAAGATTCAAACCTTGAGGACTCTGGTAAATCAACAATGTCCAGTGAAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAATGAGGAAAGGTCATCACTTATTGTACATCCTATTAGGGTTGAAAATGACACTGAATCTGGAAACCGCTTGAAGAAAAGTGAAAACCCTGATGTATATACAGAGGTCCCTCATATGAACTGCTTAATGTCTGTTAGTAATGATGCACTTCCAGTTAAGGATGATGACATAGCAAACGGACACATTCTTTGCTCCACGCATAAAGATGATAATGTAGTGGAGGTTGATCAGGCACCGAGTGGCATTTCATTGAGTGTAATAACTGAAGTAGATGGTGATGAAACAATCAAGACTCCGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTCGAAGAGCTTGCTGGGGTGCTAAGACCATTTGGGAAAGAAGCTGTCTCATCAAGAGAAACAGCAATATGGCTAGCAAAAAGCCTCATATCTTCCCAAAAGTTTAATCCTGAAACCTAA 1947 0.4155 METENGDTRSKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLASSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNVLPVYPLVNPKDKARRPNKSSGGKDHKDKEAGLVNCLERIHPIEGNADIQISNLPNDVVTISTSAEDNLETRMANLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPAREMTNNEISSKSTQDSLHEEQRFAAKHFHKLEDDDINAVTAEVEDASCNGGLDNAEAQREDSNLEDSGKSTMSSEGSSSTDKDKSINEERSSLIVHPIRVENDTESGNRLKKSENPDVYTEVPHMNCLMSVSNDALPVKDDDIANGHILCSTHKDDNVVEVDQAPSGISLSVITEVDGDETIKTPLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISSQKFNPET* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1188 648 MobiDBLite consensus disorder prediction 291 313 - -
Gso19g1188 648 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1188 648 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Gso19g1188 648 MobiDBLite consensus disorder prediction 445 490 - -
Gso19g1188 648 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1188 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gso19g1188 648 Gene3D Transferase(Phosphotransferase) domain 1 98 314 - -
Gso19g1188 648 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1188 648 CDD STKc_Nek 16 270 - -
Gso19g1188 648 MobiDBLite consensus disorder prediction 396 417 - -
Gso19g1188 648 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Gso19g1188 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 490 631 - -
Gso19g1188 648 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 485 - -
Gso19g1188 648 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 490 631 - -
Gso19g1188 648 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 485 - -
Gso19g1188 648 SUPERFAMILY Protein kinase-like (PK-like) 13 293 IPR011009 -
Gso19g1188 648 MobiDBLite consensus disorder prediction 295 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1188 Gso-Chr19 40326915 40333161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1188 9 271 MAP Kinase Kinase Kinase AT3G13530 32.453 2.51e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso19g1188 Pkinase 4.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1188 K08857 - gmx:100793379 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1188 19 40326915 40333161 Gso3g1191 3 37504668 37510248 GST
Gso19g1188 19 40326915 40333161 Gso2g1537 2 32432435 32441729 PCT
Gso2g1537 2 32432435 32441729 Gso19g1188 19 40326915 40333161 PCT