Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1187 ATGGCTGACCCCTACTCCAATTTCTTCTCTTCTTCCTCACCCTTCTTCCGTTTCAACCACAACCAATATTTCCCTTCTTCAAACCCTTCTCCACAACACCACCGCAACTTCATCAACCACACCAAAACCAACGACACCACCCCCACCTTTTTCCACTACCACCAAACTACTACTACTTTTTCTTCTTTGCCACCTTCACCTCCTTTGAGAGAAGAACTACCCCTCTTGAGGCTGAGTCCTACAAAGCAAGAGGAGGAGGAAGAGGACCTGTCTAATTGCACTGGAGCAGCCATGGATGTGGAAGAGAGGATCCACCTTAAAGAGGAAGAAGATGATGAAGATGGCACTACTAATGTCACTGTTGCACTCCACATAGGTTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCTTCTTCCTCTGAGATCACTGACAAAGACCAACATGGAGATGGTGCTGCTGAGGATCATTCTTCTGCTGGCGGCTTCAGACTCAACAAGGGTCAGTACTGGATCCCTACCCCTTCCCAGATTCTCATTGGTCCTACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGAACCCAACCAACAGGCATGTTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGACCATCCAAGAGCAAAGCCTCTCAAAGACTTTAGAACACTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGCGGCAAGGCCTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGTATTTGTGGGTCCGATTTCAAGCACAAGAGGTCCCTTAAAGACCACATTAAAGCCTTTGGGAGTGGCCATGCAGCTTATGGCATCGATGGATTCGAAGAAGAAGATGAGCCAGCTTCCGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1050 0.48 MADPYSNFFSSSSPFFRFNHNQYFPSSNPSPQHHRNFINHTKTNDTTPTFFHYHQTTTTFSSLPPSPPLREELPLLRLSPTKQEEEEEDLSNCTGAAMDVEERIHLKEEEDDEDGTTNVTVALHIGLPSPSAAEMASVLSSSSEITDKDQHGDGAAEDHSSAGGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1187 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Gso19g1187 349 SMART c2h2final6 271 291 IPR013087 -
Gso19g1187 349 SMART c2h2final6 187 209 IPR013087 -
Gso19g1187 349 Gene3D Classic Zinc Finger 186 209 - -
Gso19g1187 349 SUPERFAMILY beta-beta-alpha zinc fingers 253 291 IPR036236 -
Gso19g1187 349 PANTHER ZINC FINGER PROTEIN WIP2 1 348 IPR043584 GO:0003700|GO:0010468
Gso19g1187 349 MobiDBLite consensus disorder prediction 141 163 - -
Gso19g1187 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 348 - -
Gso19g1187 349 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Gso19g1187 349 Gene3D Classic Zinc Finger 249 324 - -
Gso19g1187 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 291 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1187 Gso-Chr19 40296414 40299382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1187 1 346 C2H2 Transcription Factor Family AT3G57670 60.417 1.59e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1187 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1187 - - gmx:100802907 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1187 19 40296414 40299382 Gso3g1190 3 37472012 37475110 GST
Gso19g1187 19 40296414 40299382 Gso2g1542 2 32749561 32752342 PCT
Gso2g1542 2 32749561 32752342 Gso19g1187 19 40296414 40299382 PCT