Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1183 ATGGATACTTGCAAGAAGTCCCCTTTGAAGCCATGGAAGAAAGGGCCAACAAGGGGGAAAGGCGGGCCCCAGAACGCCTCCTGCGAGTACCGAGGCGTTCGGCAGCGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCTAGGAGACTCTATGGTCCAGATGCATACCTTAATCTCCCCCACCTGCAACCCAGGTCCACTTCAACTATCACGTCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTGCAAGAGCTTAAGCGAAATTCAGTTGTGAGTCAATCCTCATCTAGTTCATCCAATGATCCAAAGGCAGAAATTCAGAATGTAGACAGCAAAAATCACGGAGAAGATGAAAATCCTCCAAAAGATGTTCAAACATCATCAGAGGAGGTGCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGATGGGAATACTTAAAGAAGAAAGACAGTCAGAAAGAACTGATAGCTCAGGAAGTTCAACAGTGCGTGAAGCTGTGTTGACAGATGACTGTGATCATTTGGGAGTGTTTTCTGACAAGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGACTTGCAGGTATTCAGGAATCAGAAGTCACTCAGCTTGAAGCATATGAGCCAAATGATGATCTAACTTTCTCAACTTCCATTTGGAACTTTTAA 849 0.4499 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSTITSGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKRNSVVSQSSSSSSNDPKAEIQNVDSKNHGEDENPPKDVQTSSEEVLGDLQEKPQIDLHEFLQQMGILKEERQSERTDSSGSSTVREAVLTDDCDHLGVFSDKSVNWEALIEMHGLAGIQESEVTQLEAYEPNDDLTFSTSIWNF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1183 282 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Gso19g1183 282 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gso19g1183 282 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Gso19g1183 282 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gso19g1183 282 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gso19g1183 282 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gso19g1183 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 279 - -
Gso19g1183 282 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gso19g1183 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 279 - -
Gso19g1183 282 MobiDBLite consensus disorder prediction 140 182 - -
Gso19g1183 282 MobiDBLite consensus disorder prediction 159 176 - -
Gso19g1183 282 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g1183 282 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gso19g1183 282 MobiDBLite consensus disorder prediction 140 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1183 Gso-Chr19 40250849 40252272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1183 5 282 AP2-EREBP Transcription Factor Family AT3G57600 52.650 1.59e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g1183 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1183 - - gmx:100801311 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1183 19 40250849 40252272 Gso3g1182 3 37387572 37391098 GST
Gso19g1183 19 40250849 40252272 Gso2g1546 2 32902733 32903949 PCT
Gso2g1546 2 32902733 32903949 Gso19g1183 19 40250849 40252272 PCT