Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1180 ATGAATCACTTATCTCTTGACACTGAAGATTCTCTTGCAAGCTTGCTGCTGGAGCTTGCAGCCAACAACGATGTTTCGGGTTTCAAAAGATTAATCGAGTGTGAACCTTCCTCCATAGACGAGGTTGGGTTGTGGTATGGCCGCCACAAAGAGTCAAAGAAGATGGTCAACGAGCAAAGAACTCCTTTGATGGTTGCTGCCACCTACGGTAGCATTGATGTCATGACGTTGATTCTTTCTCTATCAGAAGCTGATGTGAACCGATCATCTGGCCTTGACAAAAGCACTGCACTTCACTGTGCAGCTTCAGGTGGGTCTGAAAACGCCGTCGATGCTGTGAAACTGCTTCTAGAAGCAGGCGCTGATCGGAATTCTGTTGATGCCAATGGTCGCCGACCCGGGGATGTTATTGTTTCTCCACCGAAGCTTGATTATGTGAAGAAGAGTCTGGAAGAGCTTCTTGGAAGCGATGATTGGAGTCTCCTTAGGGTGATGAGGAGCACATGCAATGGGTGTTCAGCGGAAGATTTGAAGATGAAGACAAATGAAGTGAGTGAGAAGAAAGAGTACCCTGTTGATCTGTCCCTTCCGGACATAAAGAACAGCATATACTCAAGCGATGAGTTTCGAATGTACTCGTTCAAGGTTCGACCTTGTTCGAGGGCTTATTCACACGATTGGACTGAATGCCCCTTTGTTCATCCAGGGGAAAATGCCCGAAGAAGGGACCCGAGAAAGTTCCATTATAGTTGTGTACCTTGTCCTGAATTTCGAAAGGGTGCTTGCAGGAGAGGGGATATGTGTGAGTATGCTCATGGGGTTTTTGAGTGCTGGCTGCACCCTGCACAATATAGAACCCGGCTTTGCAAGGATGGGACTAATTGTGCAAGAAGAGTTTGCTTCTTTGCCCACACCAATGAAGAGCTTAGACCGCTCTATGTTTCAACCGGTTCTGCTGTTCCTTCTCCCCGTTCCAGTGCCTCCTCTGCTATGGATTTTGTTGCAGCCATCTCTCCTTCCTCTATGTCGGTCATGTCTCCCTCGCCGTTCACTCCGCCCATGTCGCCTTCCAGTGCTTCAATTGCTTGGCCTCAGCCTAACATCCCAGCATTGCATCTTCCAGGAAGTAATTTTCATTCCAGTAGATTGAGATCTTCACTCAATGCTAGAGATTTTTCTGTGGATGATTTTGATTTGTTATTACCTGATTATGATCATCATCATCATCAGCAGCAGCAGCAGCAACAGTTCCTTAATGAGTTATCATGCCTATCTCCACATGCTATGAATTGTAATACCATGAACCGCTCTGGTCGAATGAAACCCTTGACTCCTTCAAATCTTGATGATCTGTTTTCAGCTGAGAGTTCTTCTCCTAGATATGCTGATCCAGCATTGGCTTCAGCTGTATTTTCTCCAACTCACAAATCAGCTGTCTTCAATCAATTTCAGCACCAGCAAAGCATGTTGGCACCCCTGAATACTAATTTTGCCTCTAAAAATTTTGAGCATCCTTTATTGCAGGCCTCGTTGGGAATGTCTCCGCGAAATGTCGAACCTATTTCTCCAATGGGTTCTAGGATTTCTATGCTAGCTCAGCGCGAGAAGCAACAATTTCGCAGCTTAAGCTTCCAAGAACTCGGCTCCAACTCTGCTGCTGCCTCTGCCGATTCTTGGTCAAAATGGGGATCACCTAATGTTAAATTGGATTGGCCAGTTGGTGCTGGTGAAGTTGGTAAGCTAAGAAGGTCATCATCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTATCTTGGGTGCAGTCACTTGTTAAGGAATCACCAGCTGAAGTTAAAGATAAATTGGCAACCACTGTCTCATATGTTGCAGCAGCAGCTGCTGGATCCTCCAGTGAGGGATCAAACATTAGCACGCAAATGGAGTCTGTTGTTGATCATGCTGTACTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2004 0.4611 MNHLSLDTEDSLASLLLELAANNDVSGFKRLIECEPSSIDEVGLWYGRHKESKKMVNEQRTPLMVAATYGSIDVMTLILSLSEADVNRSSGLDKSTALHCAASGGSENAVDAVKLLLEAGADRNSVDANGRRPGDVIVSPPKLDYVKKSLEELLGSDDWSLLRVMRSTCNGCSAEDLKMKTNEVSEKKEYPVDLSLPDIKNSIYSSDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTNEELRPLYVSTGSAVPSPRSSASSAMDFVAAISPSSMSVMSPSPFTPPMSPSSASIAWPQPNIPALHLPGSNFHSSRLRSSLNARDFSVDDFDLLLPDYDHHHHQQQQQQQFLNELSCLSPHAMNCNTMNRSGRMKPLTPSNLDDLFSAESSSPRYADPALASAVFSPTHKSAVFNQFQHQQSMLAPLNTNFASKNFEHPLLQASLGMSPRNVEPISPMGSRISMLAQREKQQFRSLSFQELGSNSAAASADSWSKWGSPNVKLDWPVGAGEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPAEVKDKLATTVSYVAAAAAGSSSEGSNISTQMESVVDHAVLGAWLEQMQLDHLVAQQN* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1180 667 Pfam CCCH-type zinc finger 253 273 IPR041367 -
Gso19g1180 667 SMART c3hfinal6 248 274 IPR000571 GO:0046872
Gso19g1180 667 SMART c3hfinal6 283 306 IPR000571 GO:0046872
Gso19g1180 667 ProSiteProfiles Zinc finger C3H1-type profile. 253 275 IPR000571 GO:0046872
Gso19g1180 667 PANTHER UNKEMPT FAMILY MEMBER 1 664 IPR045234 -
Gso19g1180 667 Pfam Ankyrin repeats (3 copies) 19 125 IPR002110 GO:0005515
Gso19g1180 667 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 664 - -
Gso19g1180 667 SUPERFAMILY Ankyrin repeat 16 139 IPR036770 -
Gso19g1180 667 SMART ANK_2a 58 88 IPR002110 GO:0005515
Gso19g1180 667 SMART ANK_2a 93 125 IPR002110 GO:0005515
Gso19g1180 667 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Gso19g1180 667 Gene3D - 10 149 IPR036770 -
Gso19g1180 667 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Gso19g1180 667 Gene3D - 248 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1180 Gso-Chr19 40212983 40216037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1180 14 660 C2H2 Transcription Factor Family AT5G12850 50.716 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso19g1180 Ank_2 2.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1180 - - gmx:100791806 1231.08