Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1176 ATGGGAAACTGCTGCGCCACGCCGTCCACGGACGAAACGGCGAACAAGAAGGGCAAAAAGGGAAAAAAGGAAAACCCCTTCGCGATCGATTACGGTTTTAACGCCGCCGCCGCCGCCAACGGGTCGAAGCTCACCGTTCTGAAGTCCCCGACGGGCCGCGAGATCGAGGCCCGCTACGAGCTGGGCCGCGAGCTGGGTCGCGGTGAGTTCGGGATAACCTACCTCTGTACGGACAAGGAGACGGGGGAGGAGCTGGCCTGCAAGTCGATCTCGAAGAAGAAGCTTCGGACGGCGATAGACATCGACGACGTGAGGAGGGAGGTGGAGATCATGCGCCACTTGCCGCAGCATCCGAACATCGTGACCTTGAAGGATACCTACGAGGACGACAATGCCGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGGGAGCTCTTCGACCGCATCGTGGCCCGAGGCCACTACACCGAACGCGCCGCCGCCGCCGTCACCAAGACCATCGTCGAAGTCGTTCAGATGTGCCACAAACAAGGTGTGATGCATAGGGATCTCAAGCCGGAGAACTTTTTGTTTGCAAATAAAAAGGAAACCGCAGCTCTGAAGGCTATAGATTTTGGGTTGTCGGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGAGAAATTATGGGCCAGAAGTGGACATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTTCCGCCATTTTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTAGATCCTGACCCGAGGCGGCGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAAAATGCAAAGAAAGCTCCTAATGTTTCCTTAGGAGAAACTGTTAGAGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTAAGGGTGATTGCTGAGCATTTGACAGTAGAAGAAGCTGCTGGGCTAAAAGAGGGATTCCAGCTTATGGATACAAACAACAGAGGCAAGATTAACATTGATGAATTACGAGTAGGGTTGCATAAACTTGGTCATCAAGTTCCCGAATCAGATGTCCAAGCTCTTATGGAAGCTGGTGATGTAGATGGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTAAGAAAGATGGGAAATGATGAGCATCTTCGCAAAGCCTTCCAATTTTTTGATCAGAACAAAAGTGAGTATATTGAGATTGAGGAGCTGCGTAGCGCCTTATCTGATGATCTTGACACAAACAGTGAAGAAGTTATCAGTGCAATTATGCATGATGTGGACACAGACAAGGATGGAAGGATAAGTTACGACGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCGCGAGAGAGGTTTGCCAGTCTGAGCCTAACGTTGATGAGGGACGGGTCATTGCATTTAAACAATGAAAAACAATAA 1608 0.482 MGNCCATPSTDETANKKGKKGKKENPFAIDYGFNAAAAANGSKLTVLKSPTGREIEARYELGRELGRGEFGITYLCTDKETGEELACKSISKKKLRTAIDIDDVRREVEIMRHLPQHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKQGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQLMDTNNRGKINIDELRVGLHKLGHQVPESDVQALMEAGDVDGDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDQNKSEYIEIEELRSALSDDLDTNSEEVISAIMHDVDTDKDGRISYDEFATMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1176 535 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Gso19g1176 535 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Gso19g1176 535 SMART efh_1 472 500 IPR002048 GO:0005509
Gso19g1176 535 SMART efh_1 364 392 IPR002048 GO:0005509
Gso19g1176 535 SMART efh_1 436 464 IPR002048 GO:0005509
Gso19g1176 535 SMART efh_1 400 428 IPR002048 GO:0005509
Gso19g1176 535 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Gso19g1176 535 Pfam EF-hand domain pair 365 424 IPR002048 GO:0005509
Gso19g1176 535 MobiDBLite consensus disorder prediction 1 22 - -
Gso19g1176 535 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Gso19g1176 535 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Gso19g1176 535 SUPERFAMILY EF-hand 346 523 IPR011992 -
Gso19g1176 535 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 15 514 - -
Gso19g1176 535 Gene3D - 326 500 - -
Gso19g1176 535 SUPERFAMILY Protein kinase-like (PK-like) 58 326 IPR011009 -
Gso19g1176 535 Pfam Protein kinase domain 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1176 535 CDD STKc_CAMK 58 316 - -
Gso19g1176 535 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1176 535 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Gso19g1176 535 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Gso19g1176 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Gso19g1176 535 Gene3D Phosphorylase Kinase; domain 1 61 144 - -
Gso19g1176 535 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1176 535 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Gso19g1176 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 514 - -
Gso19g1176 535 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1176 Gso-Chr19 40141741 40146490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1176 1 533 EF-hand Containing Proteins AT5G19450 78.464 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso19g1176 Pkinase 9.4e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1176 K13412 - gmx:100790745 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1176 19 40141741 40146490 Gso3g1177 3 37308091 37312631 GST
Gso19g1176 19 40141741 40146490 Gso2g1555 2 33194060 33201751 PCT
Gso2g1555 2 33194060 33201751 Gso19g1176 19 40141741 40146490 PCT