Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1172 ATGGGGACTCCGGAATTTCCTCATCTCGGCAAGCATTGCTCTGTTTCTTATTGCAAGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGCAATCAGGTATATTGTTTGTTGCATCGAGGTTATATTAAACATAAGTGCACAAAGGCCAACAAACAAGATGTCACAGTTGCCATATGTCCTCTCTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGACCCTAACATAACATGGGACAACCATGTTAACGTTGATTGCGACCCATCAAATTACGAGAAAGTCACAGAGAAGAGAAAATGCCCTGCCCCCGGATGCAAAGAGGTCTTGGTATTCTCCAACACAATCAAGTGCAGGGACTGCCTGAAAGACCATTGCTTGAAGCACCGGTTCGGCCCCGATCACAAATGTTCTGGTCCCCAAAAGTTGGAGACAAGTTTTTCATTCATGGGTCTTTTGAATAGGAGTAGAAAAGAGGGGCCAAAGCCCAATTTAGCTTCAACAACATCATCTAAGTGGAGTTCAAGCTTTCTCAACGTGGCCTCTAATATTCGCGCCTCAGCTGAAACGGGCATGTCGAAATTGAGCGATGAAATTAACCAAGTTTGGCAGGCAGCTACTACTAGAGATGGGATGGGGCAGAGCAGTGGCAGTGGAAATAGAAATGATCACCAAGTGGAGCAATGCCCTCAGTGTAGATCAAAGTTTTCCTCTGTGACTGCTTTGGTGGATCATGTGCAACAGGTTCATGAAAGAAATGGGAACCGATTAGGGGTTAAGAAGATTGATGCATGTCCTAAGTGTAGTAAGGGATTTCTAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGAGGTGGTTCTGGAGCGTAG 879 0.4608 MGTPEFPHLGKHCSVSYCKQLDFLPFTCDRCNQVYCLLHRGYIKHKCTKANKQDVTVAICPLCAKGVRLIPDQDPNITWDNHVNVDCDPSNYEKVTEKRKCPAPGCKEVLVFSNTIKCRDCLKDHCLKHRFGPDHKCSGPQKLETSFSFMGLLNRSRKEGPKPNLASTTSSKWSSSFLNVASNIRASAETGMSKLSDEINQVWQAATTRDGMGQSSGSGNRNDHQVEQCPQCRSKFSSVTALVDHVQQVHERNGNRLGVKKIDACPKCSKGFLDPVSLVEHVERDHGGGSGA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1172 292 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 290 - -
Gso19g1172 292 Gene3D Classic Zinc Finger 194 288 - -
Gso19g1172 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gso19g1172 292 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Gso19g1172 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Gso19g1172 292 Gene3D - 81 148 IPR035896 -
Gso19g1172 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 290 - -
Gso19g1172 292 SMART c2h2final6 227 250 IPR013087 -
Gso19g1172 292 SMART c2h2final6 263 286 IPR013087 -
Gso19g1172 292 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Gso19g1172 292 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gso19g1172 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gso19g1172 292 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gso19g1172 292 Gene3D - 2 61 IPR035896 -
Gso19g1172 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gso19g1172 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gso19g1172 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1172 Gso-Chr19 40103562 40105625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1172 1 292 C2H2 Transcription Factor Family AT2G41835 58.983 5.22e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1172 zf-AN1 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1172 - - gmx:100790226 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1172 19 40103562 40105625 Gso3g1174 3 37269880 37271979 GST
Gso19g1172 19 40103562 40105625 Gso2g1557 2 33415317 33419209 PCT
Gso2g1557 2 33415317 33419209 Gso19g1172 19 40103562 40105625 PCT