Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1170 ATGGAATTTGTATGCTTGTTGTATATTCTGCTAGCTTGGTGTCTTTCAAGTTCTGAACTTGTTGGTGCTGAGCTTCAGGACCAAGATATATTAAATGCCATCAACCAAGAGCTTAGAGTCCCTGGATGGGGGGATGCCAACAACTCAAATTACTGCACTTGGCAAGGTGTCAGCTGTGGTAACCACTCAATGGTGGAAGGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAATGTAACTCTAATGTCTGAGCTCAAAGCTTTGAAGCGGCTTGATCTTTCGAATAATAACTTTGATGGATCAATTCCTCCTGCTTTTGGAAATTTATCTGATCTTGAAGTTCTAGATTTGTCTTCAAATAAGTTCCAGGGTTCAATTCCACCTCAGTTGGGTGGTCTCACAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAGATTCCAATTGAACTTCAGGGCTTAGAGAAATTGCAGGATTTTCAAATTTCTAGTAATCATTTGAGTGGTCTTGTACCTTCTTGGGTGGGAAATTTAACCAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTTGATTTCCGATCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGTCCAATACCAGCAAGCATTTTTGTGCCAGGGAAGTTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGAGCTTCCTAAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCATTCGAATTGGAAACAACCATCTAGTAGGTACCATTCCAAAGACCATTGGAAATCTTAGTAGTCTAACTTACTTTGAAGCCGATAATAATAATCTTTCCGGTGAGGTTGTGTCTGAATTTGCTCAGTGTTCTAATCTGACTCTCCTGAATTTGGCTTCAAATGGGTTTACTGGAACAATTCCACAAGACTTTGGACAGCTTATGAACCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTTGGTGATATTCCAACATCGATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACCGATTCAATGGGACAATTCCAAATGAAATCTGCAATATCTCCCGATTGCAGTACTTGCTGTTGGATCAGAATTTCATTACAGGAGAGATCCCTCATGAAATTGGAAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAACTATTCCTCCTGAGATTGGTCGCATTAGGAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGATCACTGCCCCCTGAATTAGGAAAGCTGGACAAACTTGTTTCTCTGGATGTTTCAAACAATCGGCTATCGGGTAATATCCCACCTGAGCTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTCGGAGGTCCTGTGCCAACATTTGTACCATTTCAGAAGAGTCCTAGTTCAAGTTATTTGGGCAATAAAGGGCTTTGTGGAGAGCCTTTGAACTCTTCATGTGGAGACCTTTATGATGATCACAAGGCTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACCATAGTGGTCTTGCTGTTTATGATCAGGGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGAAGATGGTTCCAATGACAACCCAACTATAATTGCAGGGACTGTTTTTGTTGATAATCTAAAACAAGCAGTAGACCTTGATACCGTCATTAAAGCAACGCTGAAAGACAGCAACAAGCTCAGCAGTGGAACTTTCAGCACTGTTTACAAGGCAGTCATGCCTTCTGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGCCATGATAATCTAGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAATGGAACATTAGCTCAGCTTCTTCATGAATCTACCAGGAAACCTGAATATCAGCCTGACTGGCCATCTAGGTTATCCATTGCCATTGGTGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATTCATCTTGATATCTCTTCTGGCAATGTTCTCTTGGATGCAAATTCCAAGCCGTTGGTTGCGGAGATTGAGATTTCAAAACTTCTTGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTCACAGCACCAGGAAATGTTTATAGCTATGGTGTTGTTCTGCTGGAAATCCTTACAACTAGACTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCATAGTGCTCCAGTAAGAGGGGATACTCCCGAGCAGATATTGGATGCTAAGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTCGCGATGCTGTGCACTGACAACACACCAGCCAAACGACCAAAAATGAAGAATGTAGTGGAAATGCTTCGAGAGATAACACAAAATTGA 2664 0.411 MEFVCLLYILLAWCLSSSELVGAELQDQDILNAINQELRVPGWGDANNSNYCTWQGVSCGNHSMVEGLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGSIPPAFGNLSDLEVLDLSSNKFQGSIPPQLGGLTNLKSLNLSNNVLVGEIPIELQGLEKLQDFQISSNHLSGLVPSWVGNLTNLRLFTAYENRLDGRIPDDLGLISDLQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGELPKEIGNCKALSSIRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGEVVSEFAQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPTSILSCKSLNKLDISNNRFNGTIPNEICNISRLQYLLLDQNFITGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGSLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPSSSYLGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVEDGSNDNPTIIAGTVFVDNLKQAVDLDTVIKATLKDSNKLSSGTFSTVYKAVMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANSKPLVAEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGDTPEQILDAKLSTVSFGWRKEMLAALKVAMLCTDNTPAKRPKMKNVVEMLREITQN* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1170 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1170 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 884 - -
Gso19g1170 887 Gene3D Ribonuclease Inhibitor 176 227 IPR032675 -
Gso19g1170 887 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Gso19g1170 887 SUPERFAMILY RNI-like 174 486 - -
Gso19g1170 887 SUPERFAMILY Protein kinase-like (PK-like) 604 881 IPR011009 -
Gso19g1170 887 Gene3D Phosphorylase Kinase; domain 1 577 684 - -
Gso19g1170 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Gso19g1170 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 884 - -
Gso19g1170 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Gso19g1170 887 SUPERFAMILY L domain-like 50 224 - -
Gso19g1170 887 SMART LRR_typ_2 109 132 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 325 349 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 85 108 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 205 229 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 446 469 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 373 397 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 133 156 IPR003591 -
Gso19g1170 887 SMART LRR_typ_2 157 180 IPR003591 -
Gso19g1170 887 Gene3D Ribonuclease Inhibitor 228 518 IPR032675 -
Gso19g1170 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Gso19g1170 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Gso19g1170 887 Pfam Leucine rich repeat 327 384 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1170 Gso-Chr19 40090149 40094532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1170 1 886 Receptor kinase-like Gene Family AT2G41820 72.553 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso19g1170 PK_Tyr_Ser-Thr 3.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1170 - - gmx:100789684 1739.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1170 19 40090149 40094532 Gso3g1172 3 37248176 37252365 GST