Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1163 ATGGGTGAACTATGTCATTCACGTGCTCCATTAGACATTAATTCCAGTGGGAGTGAGGAAAACTTGGTCTCTATTTCACCAGAAGAAATTAAGCTTGAACCCATTAGCTTTGATGGGAATGATGCTTGTCCTGTGCCACGGCCTGGAATGGTATTTAGTTCAGAGGCTGAGGCCAGATTGTACTACACAAAATATGCCAACCAAATGGGCTTTGGCATCATGACTAGAACCTCAAAAAAGGGACGTGATGGCAAAGTTAAATATTTAATACTTGTATGCTCTGGAATAACAAGAAGTGATGCTGCAAGGAAACAGTATTGTGCAGCTAGGATCAATTTGACTTTACGTAAAGATGGAACCTACCGAATTAATTCAGCTACTCTTGGTCATAGTCATGAATTGGGTTCACATCATCTACTCTCAAGTGATATTGACACGAGGGGTAAAAGGACATTGGATCAAGAAGTTGTTGACATGGGTGTTAAGAGGATATCAGACAAAAATGAATGCAGATACTACCTTCAGAAAGAAAGACATTTGATTGGGGAGAATGGAGATGGTGAAGCCCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGTGATTGACTTGGATGATTTCTTCTGTGTGAGGAATGTTTTTTGGGCAGATGGAAAGAGCAGAGCTGCATATGAATCGTTTGGTGATGTGGTGATAGTTGATACTACATGTCTTTCTAATCGCTACAAAGTTCCGCTTGTAACTTTTGTTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGCTGTTATCGTATGAAGACTCAGAGTCATTTGCTTGGTTGTTTCAATCATTGTTGCATTGCATGTCTGATGTTCCCCCTCAAGGAATCATAACAGATCATTGCTGCAAGACCATGCAGAAAGCAGTTGAAACTGTATATCCCTCCACTCGACATCGGTGGTGTTTATCAAATATAATGGAAAAACTTCCCCAACTAATCCATGGATATGCTAATTACAAGTCCTTAAGAGATCATTTGCAGAATGTTGTATATGACACACCTACAATAAGTGAATTTGAGCAGAAATGGAAGAAGATTGTGGAGGATTTTGACCTCAAGGACAATAAATGGTTGAAAGAGTTGTTCCTTGAGAGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGAGTTCTGGGCTGGAATGTCTATTAATCCACACAATGAAAGCATGCATGCATTTTTTGATGGATATGTAAGCCGGCTAACAACTCTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATATAAGGCTGAGAAAGAATATGTAGCTGACATACATTCATCAAGTAACAGTCAAGCTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAAGCTGCATACACTCATGCCAAGTTTCTGGAGGTTCAACATGAATTTGTTGGAAAGGCAGATTGTAATGTGTCTGTTGCCTCTGATGATGGTTCTATTTTTCACTACAATGTCATTGAGGATGGGATAATAGATGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGTTGATTGTGATGTAAAATGTAGTTGTCACTTGTTTGAGTTCAGAGGCATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATTCGAAGGAAGTATGCTTATATCAAAACCAGCTATGGTGTTCAGCATTTTGAACCTCATGTGCAGAGGCTTGAACTATTATGCAATCAATTCAACAGTATTGCTGCTGTTGCTGCAGAATTTGAGGATACAAGTTCTTTTGTAAAGGATAACCTATGTAACTTAAAGGAGAAGCTTGAAGCATGGACAACCTTATTGAGGAACTCATCTCAGGTGGATGTAGAGAAATGTAATTATATGATGGATTGGGAATGA 1977 0.394 MGELCHSRAPLDINSSGSEENLVSISPEEIKLEPISFDGNDACPVPRPGMVFSSEAEARLYYTKYANQMGFGIMTRTSKKGRDGKVKYLILVCSGITRSDAARKQYCAARINLTLRKDGTYRINSATLGHSHELGSHHLLSSDIDTRGKRTLDQEVVDMGVKRISDKNECRYYLQKERHLIGENGDGEALQKYLVRMQEQDRNFFYVIDLDDFFCVRNVFWADGKSRAAYESFGDVVIVDTTCLSNRYKVPLVTFVGVNHHGQSVLFGCGLLSYEDSESFAWLFQSLLHCMSDVPPQGIITDHCCKTMQKAVETVYPSTRHRWCLSNIMEKLPQLIHGYANYKSLRDHLQNVVYDTPTISEFEQKWKKIVEDFDLKDNKWLKELFLERHRWAPSFVRGEFWAGMSINPHNESMHAFFDGYVSRLTTLKQFVDQYDNALQYKAEKEYVADIHSSSNSQACVTKSPIERQFQAAYTHAKFLEVQHEFVGKADCNVSVASDDGSIFHYNVIEDGIIDDKPKESVVEVIYNRVDCDVKCSCHLFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNIRRKYAYIKTSYGVQHFEPHVQRLELLCNQFNSIAAVAAEFEDTSSFVKDNLCNLKEKLEAWTTLLRNSSQVDVEKCNYMMDWE* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1163 658 SMART 26again6 533 560 IPR006564 GO:0008270
Gso19g1163 658 Pfam MULE transposase domain 236 330 IPR018289 -
Gso19g1163 658 Pfam SWIM zinc finger 532 555 IPR007527 GO:0008270
Gso19g1163 658 ProSiteProfiles Zinc finger SWIM-type profile. 520 558 IPR007527 GO:0008270
Gso19g1163 658 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 651 IPR031052 GO:0006355
Gso19g1163 658 PANTHER OS03G0843700 PROTEIN 15 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1163 Gso-Chr19 39937025 39940378 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso19g1163 MULE 6.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1163 - K17604 gmx:102663358 1350.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1163 19 39937025 39940378 Gso3g1166 3 37182457 37185334 GST