Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1159 ATGGCTTCGTCTTCCTCCGATCCAGGAAAGTCCGCGGAGACGTCGGAGGCGGCGGTGGTGGTGGCGAACGACCAGCTCTTGCTCTACAGAGGATTGAAGAAGGCCAAGAAGGAGAGAGGTTGCACGGCCAAAGAGCGCATCAGCAAAATGCCTCCGTGCGCCGCCGGCAAACGCAGTTCCATATACCGCGGCGTCACGAGGCACAGGTGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAGAGTACGTGGAACCAAAATCAGAATAAGAAGGGAAAGCAAGTTTACTTGGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCATATGATCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTCATTAACTTTCCTGTGACGGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCAAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGTCGATGGGATCCATCGTATGGCCGTATGTCTGGATCTGATTACTTCAATAGCATGCATTATGGGGATGATTCTGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGAGTAGACATTCTGATGCTGGGACAAGATTATCAGAAGAAAAGAAACTTGGTTCTGCTGGAGATATTTGCATTGAAATTAAGCAATTGGAGCAGAAAGTTCAACCTACAGCACCTTACCAGATGCCACAGTTAGGAAGGCCCCAAAATGAGAAAAAGCATAGAAGTTCTTCAGTTTCTGCCTTAAGTATCTTGTCACAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCGTCGAAGACACTGGAAAATATCATAGATAATGATGAGAATGAAAACAAAAATACAATCAACAAGTTGGATCATGGCAAGGCAGTTGAGAAACCATCAAATCATGACGGAGGCAATGACCGGCTTGACATTGCAACGGGAATGAGTGGAACAATGTCTCTTCAAAGAAATGTTTACCCATTGACACCATTCTTGTCTGCACCACTTTTAACAGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCCATGCTTCCTGCTGGCCTTTCTCATACAGCTGAGGTTACAAAGACAGAGACCAGTTCAACGTACACGATGTTTCGGCCAGAGGAATGA 1251 0.4532 MASSSSDPGKSAETSEAAVVVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPSYGRMSGSDYFNSMHYGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKSRHSDAGTRLSEEKKLGSAGDICIEIKQLEQKVQPTAPYQMPQLGRPQNEKKHRSSSVSALSILSQSAAYKSLQEKASKTLENIIDNDENENKNTINKLDHGKAVEKPSNHDGGNDRLDIATGMSGTMSLQRNVYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLVPMLPAGLSHTAEVTKTETSSTYTMFRPEE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1159 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 415 - -
Gso19g1159 416 PANTHER BNAA03G19580D PROTEIN 9 415 - -
Gso19g1159 416 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Gso19g1159 416 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Gso19g1159 416 SUPERFAMILY DNA-binding domain 60 128 IPR016177 GO:0003677
Gso19g1159 416 SMART rav1_2 61 133 IPR001471 GO:0003700|GO:0006355
Gso19g1159 416 MobiDBLite consensus disorder prediction 314 336 - -
Gso19g1159 416 ProSiteProfiles AP2/ERF domain profile. 61 127 IPR001471 GO:0003700|GO:0006355
Gso19g1159 416 MobiDBLite consensus disorder prediction 314 340 - -
Gso19g1159 416 Coils Coil 300 320 - -
Gso19g1159 416 Pfam AP2 domain 61 119 IPR001471 GO:0003700|GO:0006355
Gso19g1159 416 Gene3D AP2/ERF domain 61 129 IPR036955 GO:0003700|GO:0006355
Gso19g1159 416 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1159 Gso-Chr19 39847296 39851307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1159 19 414 AP2-EREBP Transcription Factor Family AT2G41710 63.659 6.72e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g1159 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1159 K09285 - gmx:100786651 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1159 19 39847296 39851307 Gso3g1161 3 37101284 37105148 GST