Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1158 ATGGAAGGAACAAGCAATAAGGGGTTGTTGGAATGTGGAAGGAAGTGCACTCCACCGCCGTTTTTGTTGAAGACTTATATGCTTGTGGAGGATCCGGCCACCGACGACGTCATTTCGTGGAATGCCAAAGGGACGGCGTTCGTGGTGTGGCAGCCGCCGGAGTTTGCTCGGGATCTCCTCCCAACACTCTTCAAGCACAGCAACTTCTCTAGCTTTGTACGCCAGCTCAATACTTATGTACGTGGCTTTCGTAAAGTTGCAACAAGCAGATGGGAGTTTTTCAATGACAAGTTCAAGAAAGGTGAAAGAGAACTTCTACATGAGATTCGGCGAAGGAAAGCTTGGAGCAGCAAGCAACAACCTAATGCACCAAACCAAGGCACACCCCAAGACTCTGATGAGGATCAAAGGTCCTCATCAACCTCATCATCTTTTGGTTACACTACTCTTGTGGATGAAAACAAGCGACTCAAGAAGGAGAATGGGGTGCTGAACTCTGAGCTCACAAGCATGAAAAGGAAGTGCAAGGAACTGCTTGATTTGGTTGCCACATATTCATCACATGCAAAGGAGGAGAAAAAGGATGAAAGGCCAATGTTGTTTGGAGTGAGATTAGAGGTTCAAGGAGGGAGGGAGATGAAGAGGAATAGGGCTGAGATGAGTGAAAGCACAAGCATTATGTTGTCTCAGTCATGCAAATAG 702 0.4687 MEGTSNKGLLECGRKCTPPPFLLKTYMLVEDPATDDVISWNAKGTAFVVWQPPEFARDLLPTLFKHSNFSSFVRQLNTYVRGFRKVATSRWEFFNDKFKKGERELLHEIRRRKAWSSKQQPNAPNQGTPQDSDEDQRSSSTSSSFGYTTLVDENKRLKKENGVLNSELTSMKRKCKELLDLVATYSSHAKEEKKDERPMLFGVRLEVQGGREMKRNRAEMSESTSIMLSQSCK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1158 233 Coils Coil 154 174 - -
Gso19g1158 233 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 233 IPR027725 -
Gso19g1158 233 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 5 233 - -
Gso19g1158 233 Pfam HSF-type DNA-binding 21 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso19g1158 233 Gene3D - 13 113 IPR036388 -
Gso19g1158 233 MobiDBLite consensus disorder prediction 116 146 - -
Gso19g1158 233 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso19g1158 233 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso19g1158 233 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso19g1158 233 SUPERFAMILY "Winged helix" DNA-binding domain 17 112 IPR036390 -
Gso19g1158 233 MobiDBLite consensus disorder prediction 212 233 - -
Gso19g1158 233 MobiDBLite consensus disorder prediction 112 146 - -
Gso19g1158 233 SMART hsfneu3 17 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1158 Gso-Chr19 39830594 39833370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1158 18 206 HSF AT2G41690 55.981 2.24e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso19g1158 HSF_DNA-bind 4.2e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1158 K09419 - gmx:100786140 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1158 19 39830594 39833370 Gso3g1159 3 37017493 37021001 GST