Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1157 ATGGTGATATTATGGGAAGATATAACCGTCCAGCACCGTTTTTTGGAAGACAAGAAGAAGTTGCTTAGTGGAATCACTGGTTTTGCTGAAGCTGGTAGGATCATGGCTGTCATGGGTCCTTCTGGCTCTGGCAAAACCACCCTCCTCGACTCATTGGCTGGAAGACTTCCTGTAAATGTTGTTGTAACCGGGAACATTCTAATCAACGGGAAGAGAAGCTTATATTCCAAGGAAGTGTCCTACGTTGCACAAGAGGAACTTTTCTTGGGTACTTTGACTGTAAAAGAGACCCTAACTTACTCAGCAAACACGAGGCTTCCTTCTAAAATGAGCAAAGAAGAGATAAACAAAGTGGTGGAAGAAACAATAATGGAAATGGGTCTGGAAGATTGTGCAGATACTAGGATTGGAAATTGGCATTGTAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAGATTCTGACACAACCCCATGTCTTACTTCTTGATGAACCTACTACTGGACTTGATAGTGCCTCAGCTTTCTATGTCATTCAATCTCTATGCCACATTGCTCTCAATGGAAAGATAGTTATCTGCTCCATTCACCAACCCAGTAGTGAAACTTTTGATCTATTTGATGATTTGCTTTTGCTCTCAATTGGGGAAACTGTTTATTTTGGAGAAGCCAACATGGCTCTAAAGTTTTTTGCTGATGCAGGGTTACCCTGCCCTTCTAGAAGAAATCCTTCAGATCATTTCCTTCTGTGTATCAATTTGGACTTTGACCTGCTTACTTCAACTCTAGCAAGATCACAGTTAGATTTGCCATCTTCATCAAATTCAGCACTGGGAACAAAAAAAGCCGAGATTAGAGAGACACTCATTCGAAGTTATAAAGGTTCAGGGATAATGATCAATGCGAGAAGAAGAATTCAACAACTGAAACCTAATGAGGAGCAAAAAATTAAGCCCAACATAGGTAGCAGTGCCACATGGTGGAAGCAATTGTGCACATTGACCAAGCGATCTTTCGTAAACATGACTAGGGATATTGGTTACTACTGGCTGAGGATGGTATTCTACATATTGATAGGAATCACTGTTGGCACCCTCTATTTTCATATTGGCACAGCCAACAACTCAATATTGGATAGAGGAAAGTGTGTATCTTTCATCTATGGGTTCAATATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTAGTTTCAAACATCATATCATCATTCCCTTTCCTTGTTCTAACATCTCTCTCGTCTGGAATAATCATTTACTTCATGGTGCAACTTCATCCGGGTTTAACTAATTTTGCATTTTTCTGTATCGACTTATTCTGCTGCATATCCGTTGTTGAGTGCTGCATGATGATTGTAGCCTCAGTGGTCCCCAATGTGCTGATGGGCTTAGGAACAGGAACTGGTGTAATTGTTTTCATGATGATGCCCTCTCTATTATTCAGACCACTGCAAGACATTCCAAAGTTCTTTTGGCGCTACCCCATGTCATACCTCAGTTTTACTACATGGGCAGTGCAGGGACAGTACAAGAATGACATGCTGGGGCTTGAATTTGATCCTCTGCTACCTGGGAACCCAAAACTCACTGGGGAGCAAGTCCTAACATTGTTATTTGGTGTCCCGTTGAATCATGGCAAATGGTGGGACTTAACAGCATTGATTATTTTGTTAATAGTTCACAGATTGCTTCTTTTCTTGGCGCTTCGGTATAGCAAAAGATCATCGACATCACCCATGTTGTGGTTTCATAGATGCCGGGGAAAGTCTACAATTTGCAGAAAGATGTCTATTTAG 1890 0.4111 MVILWEDITVQHRFLEDKKKLLSGITGFAEAGRIMAVMGPSGSGKTTLLDSLAGRLPVNVVVTGNILINGKRSLYSKEVSYVAQEELFLGTLTVKETLTYSANTRLPSKMSKEEINKVVEETIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPHVLLLDEPTTGLDSASAFYVIQSLCHIALNGKIVICSIHQPSSETFDLFDDLLLLSIGETVYFGEANMALKFFADAGLPCPSRRNPSDHFLLCINLDFDLLTSTLARSQLDLPSSSNSALGTKKAEIRETLIRSYKGSGIMINARRRIQQLKPNEEQKIKPNIGSSATWWKQLCTLTKRSFVNMTRDIGYYWLRMVFYILIGITVGTLYFHIGTANNSILDRGKCVSFIYGFNICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVVSNIISSFPFLVLTSLSSGIIIYFMVQLHPGLTNFAFFCIDLFCCISVVECCMMIVASVVPNVLMGLGTGTGVIVFMMMPSLLFRPLQDIPKFFWRYPMSYLSFTTWAVQGQYKNDMLGLEFDPLLPGNPKLTGEQVLTLLFGVPLNHGKWWDLTALIILLIVHRLLLFLALRYSKRSSTSPMLWFHRCRGKSTICRKMSI* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1157 629 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 614 - -
Gso19g1157 629 Pfam ABC-2 type transporter 201 253 IPR043926 GO:0140359
Gso19g1157 629 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 244 IPR003439 GO:0005524
Gso19g1157 629 Gene3D - 1 238 IPR027417 -
Gso19g1157 629 Pfam ABC-2 type transporter 334 539 IPR013525 GO:0016020|GO:0140359
Gso19g1157 629 Pfam ABC transporter 29 171 IPR003439 GO:0005524
Gso19g1157 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 233 IPR027417 -
Gso19g1157 629 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 1 614 - -
Gso19g1157 629 SMART AAA_5 31 229 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1157 Gso-Chr19 39813764 39818282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1157 31 205 Calmodulin-binding Proteins AT2G36910 28.962 6.14e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1157 - K05681 gmx:100787198 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1157 19 39813764 39818282 Gso3g1158 3 37002912 37008064 GST