Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1152 ATGGCTGAATCATTTATCTTCAGCATCGCTGAGTCTCTCATAACAAAGCTTGCTTCTCATGCTTTCCAAGAAGCTTCTCGGGTGGTGGGTTTGTACGACCATCTCCGAGACCTTAAAAAGACTCTCTCATTAGTTAAGGCAGTGCTGTTAGATGCTGAGCAAAAGCAGGAGCATAACCATGTGCTTCGGGAATGGCTGAGGCAGCTCAAAAGTGTCTTCTATGATGCCCAAGATGTGCTCGATGAATTTGAGTGCCAAACACTGCGAAAGCAAGTGCTCAAAGATCATGGTACCATCAAAGACCAGGTAAGCCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTCCAAGATGGCTCAACAAATCAAAGATGTCAGCAAGCGGCTAGACAAGGTTGCAGCTGATGGGCAGAAGTTTGGTCTCCGAATAATTGATGTTGACACACGAGTTGTTCATAAGAGAGACACGAGTCGCATGACACACTCCGGTGGCGTGAGTGACTCAGATGTGATAGGAAGGGAACATGATAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCCAATGATGATGATAAAAGTCTCTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACAGTCGCAAAGTTTGTGTTTAATGATAAGAGGATAGACGGGTGTTTCCCATTAAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAACCAACTCATCATCAAAATCATCAATTCTGCAAATGTTGATGATGCTCCTCTTCGCCAACAAAATTTAGACATGGTCGATCTGGAGCAATTACAAAATCAATTGAGAAGCAGACTTGCCGGTAAAAAATTCTTACTTGTCCTGGATGACGTATGGAATGATGACCGTGTTAAATGGATTGAGCTGAGGAATTTAATAAAGGTAGGGGTTGCTCCAGGAAGTAAAATTCTAGTGACTACACGTATTGATTCCATTGCTTCCATGATGGGGACTGTTGCCTCTTACAAGTTACAACGCCTTTCTCCGGAGAATTCATGGTCTCTTTTTGTCAAATGGGCATTTAAAAACGAAGGCGAAGAGGAAAAACATCCTCATTTGGTAAATATCGGAGAAGGAATTGTGAACAAATGCAAAGGGGTTCCATTGGCTGTGAGAACATTGGGGAGTTTACTATTTTCAAAGTTTGAGGCAAATGAGTGGGAATATGTGAGAGACAATGAAATTTGGAATTTGCCACAAAATAAAGATGACATTTTACCTGCACTTAAATTAAGTTATGATTTCTTGCCCTCCTATTTGAGGCAATGTTTTGCATTGTTTTCACTTTACCCAAAGGATTATGAATTTCATAGTGTTGAGGTAGCTAGGCTTTGGGAGGCACTTGGTGTCCTTGCACCACCAAGAAAGAATGAGACACCGAAAGATGTTGTCATACAGTATCTGGATGAATTACTGTCAAGATCTTTCCTTCAAGATTTTGTCAATTTGGGCACTATTTATCAATTTAAAATTCATGATTTGGTGCATGATCTTGCTCTGTTTGTTGCAAAAGATGATTGTCTACTTGTAAATTCCCACGTTCAAAATATTCCTGAGAATATTCGGCATCTGTCTTTTGCGGAATTCAGTTCTCTTGGAAATTCATTCACCTCAAAATCGGTAGCCGTGAGATCTATAATGATTCCAAATGGTGCAGAAGGAGCCAACGTTGAAGCTTTGCTAAATACCTGTGTGTCAAAGTTCAAATTATTGCGAGTTTTGGATTTAAGAGATTCGACATGCAAGACTTTGTCACGTTCTATTGGTAAGTTGAAACACTTGAGATCTTTCAGCATTCAGAATAATCCCAACATCAAGAGACTCCCCAATTCTATTTGCAAGCTCCAAAATTTGCAATTCTTGAGTGTTCTGAGATGCAAGGAGCTGGAAGCATTGCCCAAAGGATTCAGAAAATTGATTTGTCTTCGGCATTTGGGGATAACTACAAAGCAACCTGTTTTGCCTTACACTGAGATTACCAATTTGATCTCCCTTGAACTTCTGTCTATTCAATCATGCCATAATATGGAGTCTATCTTTGGAGGGGTGAAGTTCCCTGCTCTTAAAGCATTGAATGTTGCTGCCTGTCATAGTCTGAAGTCTTTGCCACTGGATGTTATAAATTTTCCTGAATTAGAAACTCTGACTGTTAAAGATTGTGTTAATCTGGACTTAGATCTGTGGAAGGAACACCATGAAGAACAAAACCCCAAGTTAAGGTTAAAATATGTTGCATTCTGGGGCTTACCACAGCTGGTGGCCTTACCTCAATGGCTTCAAGAAACTGCCAACTCCTTACGGACCTTGATTATTTCAGACTGCGACAATCTTGAAATGCTTCCGGAGTGGCTGTCAACTATGACTAATCTGAAAGTACTTCTTATATATGGTTGTCCAAAGCTTATATCTCTCCCGGATAACATCCATCACCTGACCGCACTTGAACGTTTGCATATCTATGGTTGCCATCAATTATGCGAAAAATGCGAGCCCCATGTCGGTGAGTTTTGGTCCAAAATATCACATATCAAACACGTCTTCATTGAAAGACGAATAAGGATTTGTTGA 2610 0.4046 MAESFIFSIAESLITKLASHAFQEASRVVGLYDHLRDLKKTLSLVKAVLLDAEQKQEHNHVLREWLRQLKSVFYDAQDVLDEFECQTLRKQVLKDHGTIKDQVSHFFSSSNPLVFRSKMAQQIKDVSKRLDKVAADGQKFGLRIIDVDTRVVHKRDTSRMTHSGGVSDSDVIGREHDKEKIIELLMQQNPNDDDKSLSVIPIVGIGGLGKTTVAKFVFNDKRIDGCFPLKMWVCVSDDFDINQLIIKIINSANVDDAPLRQQNLDMVDLEQLQNQLRSRLAGKKFLLVLDDVWNDDRVKWIELRNLIKVGVAPGSKILVTTRIDSIASMMGTVASYKLQRLSPENSWSLFVKWAFKNEGEEEKHPHLVNIGEGIVNKCKGVPLAVRTLGSLLFSKFEANEWEYVRDNEIWNLPQNKDDILPALKLSYDFLPSYLRQCFALFSLYPKDYEFHSVEVARLWEALGVLAPPRKNETPKDVVIQYLDELLSRSFLQDFVNLGTIYQFKIHDLVHDLALFVAKDDCLLVNSHVQNIPENIRHLSFAEFSSLGNSFTSKSVAVRSIMIPNGAEGANVEALLNTCVSKFKLLRVLDLRDSTCKTLSRSIGKLKHLRSFSIQNNPNIKRLPNSICKLQNLQFLSVLRCKELEALPKGFRKLICLRHLGITTKQPVLPYTEITNLISLELLSIQSCHNMESIFGGVKFPALKALNVAACHSLKSLPLDVINFPELETLTVKDCVNLDLDLWKEHHEEQNPKLRLKYVAFWGLPQLVALPQWLQETANSLRTLIISDCDNLEMLPEWLSTMTNLKVLLIYGCPKLISLPDNIHHLTALERLHIYGCHQLCEKCEPHVGEFWSKISHIKHVFIERRIRIC* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1152 869 Pfam Rx N-terminal domain 11 100 IPR041118 -
Gso19g1152 869 Gene3D - 340 425 IPR042197 -
Gso19g1152 869 Gene3D - 153 335 IPR027417 -
Gso19g1152 869 SUPERFAMILY L domain-like 504 862 - -
Gso19g1152 869 CDD RX-CC_like 2 134 IPR038005 -
Gso19g1152 869 Coils Coil 259 279 - -
Gso19g1152 869 PRINTS Disease resistance protein signature 199 214 - -
Gso19g1152 869 PRINTS Disease resistance protein signature 279 293 - -
Gso19g1152 869 PRINTS Disease resistance protein signature 378 392 - -
Gso19g1152 869 PRINTS Disease resistance protein signature 674 690 - -
Gso19g1152 869 Coils Coil 35 55 - -
Gso19g1152 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 440 IPR027417 -
Gso19g1152 869 Gene3D - 10 124 - -
Gso19g1152 869 PANTHER DISEASE RESISTANCE PROTEIN RP 6 793 IPR044974 GO:0006952
Gso19g1152 869 Pfam NB-ARC domain 174 428 IPR002182 GO:0043531
Gso19g1152 869 Gene3D Ribonuclease Inhibitor 517 750 IPR032675 -
Gso19g1152 869 Gene3D Ribonuclease Inhibitor 751 850 IPR032675 -
Gso19g1152 869 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 793 - -
Gso19g1152 869 Gene3D - 426 514 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1152 Gso-Chr19 39756159 39759229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1152 182 839 WRKY Transcription Factor Family AT5G45050 21.727 4.91e-09 58.5