Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1145 ATGGAGAGAACTCTCCTCAAGAATTTCGAGCTCGAGCACAAAAATCCCTCCGTCGAAGCCCTCCGCCGATGGAGATCCGCCGTCACTTTCGTCAAGAACCACCGCCGCCGCTTCCGCATGGTCGCCGATCTCGACAAGCGCGTCGAAGCCGAGCAGATTAAGCAGGGAATCAAGGAAAAATTTCGAATTGCTCTCTACGTTCAAAAGGCAGCATTACAATTTATCGATGCTGGTAATCGAGTCGAGTACAAACTATCAAGTGAGGTAAGAGATGCTGGTTTTGGTATTCATCCAGATGAGATTGCTTCTATTGTTCGTGGTCATGATAACAAGACCTTAAATGATATTGGTGGAGTTGAATCCATTGCAAGGAAATTGTTAGTTTCGGTAGATGGAGGTGTCAACGAAGAGAGTATAAATAGCAGACAACAGATTTATGGATTCAATCGTTATACCGAAAAACCTTCTAGGTCGTTCCTGATGTTTGTGTGGGATGCATTGCAGGACTTAACTCTAATCATTCTCATGGTTTGTGCTGTAGTTTCTATAGGTATAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACTTATGATGGTGTGGGAATCATACTCAGTATATTCTTGGTCGTCATTGTTACAGCTGTCAGTGATTACAAGCAGTCCCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCAATAGAGATGGGAAAAGACAAAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCCGCTGATGGGATTTTTATATCAGGATACTCTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCGGTAAATATAAATGAAGAAAAACCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTGGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGACTCTAAACCAGGGAGGAGAGGATGAAACCCCATTGCAGGTTAAATTAAATGGAGTTGCTACTATTATTGGTCAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTGTTGACAGTTAGGTTTGTGGTCGAAAAAGCGCTTCATGGTGAGTTTGCCAGTTGGTCTTCAGATGATGCAAAGAAGTTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAACTAATGAATGACAAGGCACTTGTAAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACAAAATGGTGGTTACTAAAGCATGGATATGCGAAAAATCCATGGAGATAAAAGGTAATGAGAGTGCAGACGAACTGAAAACATGTACATCTGAAGGAGTTCTAAACATCCTTTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTCAAGGATAAAAATGGAAAGGACACTATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTTGGCTGCCTCTTGGGTGCTGATTTTGATGCGTATGCACAGCGTAGAGAGTATAAGATACTCCAAGTTGAGCCATTCAATTCAGTCCGCAAGAAAATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGAGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATGGATTGCAATGGGGAAGTTGTTGATCTTCCTGAAGACCGGGCAAATAATGTCTCTGCTGTTATAAATGCCTTTGCCTCTGAAGCTTTGAGAACTATTTGCTTGGCCTTTAAAGAGATAAATGAAACCCATGAACCCAACATTTCAGATAGTGGCTATACTTTCATAGCCTTAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCAATTCAAACTTGTATAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATAAATACAGCTAAAGCTATAGCTAAAGAATGTGGTTTACTTACAGAGGGTGGTCTAGCCATAGAAGGTCCAGATTTTCGTGACTTGTCTCCTGAGCAAATGAAGGATGTTATACCAAGAATCCAGGTGATGGCACGATCCTTACCTCTGGACAAGCACAGATTAGTAACCAATTTGAGGAAATTGTTTGGTGAGGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGTGCGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCCAAAGAAAATGCCGATGTCATTATAATGGATGATAACTTCACGACTATTGTCAATGTTGTCAAATGGGGACGTGCAGTATACATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTTTCTGCGTGCATCACTGGATCTGCTCCACTCACCGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAACTTTATCACCAAACCTATGTGGAGGAATATCATAGGTCAAAGCATATATCAATTAATCATCCTAGGGATTCTAAATTTTGACGGGAAGAGGCTACTCGGACTTAGTGGTTCAGATGCAACGAAAGTTCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGAGGCATGTTTGACAGCCGGATATTTTTGGCGATAATTTTCGCCACCGTGGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTAAGTGTGGTAATCGGAGCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATACTAGTAAGCAGCACCATGATGGTTATGAAGCACTGCCATCTGGTCCCGAGCTGGCATAA 3108 0.4196 MERTLLKNFELEHKNPSVEALRRWRSAVTFVKNHRRRFRMVADLDKRVEAEQIKQGIKEKFRIALYVQKAALQFIDAGNRVEYKLSSEVRDAGFGIHPDEIASIVRGHDNKTLNDIGGVESIARKLLVSVDGGVNEESINSRQQIYGFNRYTEKPSRSFLMFVWDALQDLTLIILMVCAVVSIGIGIATEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVNRDGKRQKISIYDIVVGDVVHLSTGDQVPADGIFISGYSLLIDESSLSGESEPVNINEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNQGGEDETPLQVKLNGVATIIGQIGLTFAILTFVVLTVRFVVEKALHGEFASWSSDDAKKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNKMVVTKAWICEKSMEIKGNESADELKTCTSEGVLNILLQAIFQNTSAEVVKDKNGKDTILGTPTESALLEFGCLLGADFDAYAQRREYKILQVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCDKIMDCNGEVVDLPEDRANNVSAVINAFASEALRTICLAFKEINETHEPNISDSGYTFIALVGIKDPVRPGVKEAIQTCIAAGITIRMVTGDNINTAKAIAKECGLLTEGGLAIEGPDFRDLSPEQMKDVIPRIQVMARSLPLDKHRLVTNLRKLFGEVVAVTGDGTNDAPALCEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVVKWGRAVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILGILNFDGKRLLGLSGSDATKVLNTLIFNSFVFCQVFNEINSRDIDKINIFRGMFDSRIFLAIIFATVAFQVVIVEFLGTFASTVPLNWQFWLLSVVIGAVSMPIAAILKCIPVERDTSKQHHDGYEALPSGPELA* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1145 1035 SFLD C1.7: P-type atpase like 432 804 - -
Gso19g1145 1035 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Gso19g1145 1035 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Gso19g1145 1035 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Gso19g1145 1035 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Gso19g1145 1035 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Gso19g1145 1035 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Gso19g1145 1035 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Gso19g1145 1035 SMART Cation_ATPase_N_a_2 115 187 IPR004014 -
Gso19g1145 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1013 IPR023298 -
Gso19g1145 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 549 697 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1145 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 719 839 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1145 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 473 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1145 1035 Gene3D - 133 333 - -
Gso19g1145 1035 PANTHER CALCIUM-TRANSPORTING ATPASE 45 1019 - -
Gso19g1145 1035 CDD P-type_ATPase_Ca_PMCA-like 139 885 - -
Gso19g1145 1035 SFLD p-type atpase 432 804 IPR044492 -
Gso19g1145 1035 SUPERFAMILY HAD-like 449 857 IPR036412 -
Gso19g1145 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Gso19g1145 1035 Pfam E1-E2 ATPase 236 428 - -
Gso19g1145 1035 PANTHER CATION TRANSPORTING ATPASE 45 1019 - -
Gso19g1145 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Gso19g1145 1035 Pfam Cation transport ATPase (P-type) 504 592 - -
Gso19g1145 1035 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso19g1145 1035 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Gso19g1145 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 661 IPR023299 GO:0000166
Gso19g1145 1035 Gene3D - 16 77 - -
Gso19g1145 1035 Gene3D - 460 656 IPR023299 GO:0000166
Gso19g1145 1035 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Gso19g1145 1035 Gene3D - 165 1011 - -
Gso19g1145 1035 Gene3D - 447 797 IPR023214 -
Gso19g1145 1035 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1145 1035 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso19g1145 1035 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1145 Gso-Chr19 39669139 39680491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1145 57 1032 Primary Pumps ATPases AT3G57330 73.361 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1145 K01537 - gmx:100783489 2006.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1145 19 39669139 39680491 Gso3g1148 3 36853050 36865778 GST
Gso19g1145 19 39669139 39680491 Gso2g1587 2 35495331 35507547 PCT
Gso19g1145 19 39669139 39680491 Gso10g0998 10 25453940 25465137 PCT
Gso2g1587 2 35495331 35507547 Gso19g1145 19 39669139 39680491 PCT
Gso10g0998 10 25453940 25465137 Gso19g1145 19 39669139 39680491 PCT