Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1141 ATGGATCACAGGCCGAAATCCAAGGACTCACTCTCTTACTCCACTCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCAAAACAAGATGATGATTTTGATTATTACGGGAATAGTAGTCAGGATGAGAGCAGAGACAGCGAAGGTGGGGGGATTACAAATCACGGTAATGGGAATGTGCATGAAAAGGAAGTGAATTTGTTCAAGAAGAGGAGATGGTCTCTAAACAGTGACAACAAGGAGAAGACCAGTTTTTACGGGGCACACATGACGGAGGAGCGATATCGATCGATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGGTACCTTGAGTAGTCCCGCCCAAAATCAGGCTGCTGCTCCACTTGTGAAAAGCAACACGGGACTAAAAGCTCGCAAGTCAGGGAATGAGCACAGGGGAGGAGGATTACATGTGGCGGAGAGTACATCGGAATGGATGAATGATTCCAGTTCTCAGAAACCTGGAAACTACCGCGATGCAGATTTCTCACCACAATATGGCACTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAAGATTCCTCCGGTCTATGATAAGTTGGCTGGAGCTCTGAACCTCCCAAGCTTCTCGGATATCCATGTTGAGGATTTTTACTTAAAGGGTACTTTGGATTTGGGCTCCTTAGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGAGAAGCAATACCACAATTTGAATCACTGCAGGCACGACTGAAGGTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGTCTGAAAATGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCGGGAAGTATAAGGCGATCTATTTTGTCTGAGGGTGGAGTATTGCAGGTATATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATCGAGAAGGAGGAAATGGAAAGATGTGGAAAAATTTGGGCAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTCACTATTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGTCAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGACTGTCGGTATGCGCACCCGGAAACTAGCTAGAGACATGTTACTGTTCTGGAAACGAATAGACAAGGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCGAACTTACTATCTTCAGAAACTTTACCCAAGGAAGATGAAGATGCAGATGATCAAGATGCACTGGTTGACTCTTCAGATGTGATGCCCGATGAGGAGGTAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTCTAAGCAGAGAATGTTGACAAGTGCTTTTGACATTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACCCCCTCCACCATGCCAGTGGCATCCACTGTTCGGACACCTGAATTATTTAAAGGGGTTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCTGATGAGATGGGGCTTGGAAAGACCATTCAGGCCATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGAGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCTATCAAAAGTGCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAACGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTTACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGATGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATACAAAGTTCTGAAACTCTCAGCTCAGCTGTTGGTCCTGTTGTCTCCAGAGAATCTTTTCATAAACATTTTAATATTTTTAGACCCGAAAATGTTTATCGGTCTGTCTTCTCAGAAGATATGTACAGTAAAAGTGGAAATTTTGGTTTTACCCATATGATGGATTTGTCTCCACAAGAGGTGACATTTCTGGCTACTGGTTCTTTTATGGAGCGACTACTATTTTCTATGATGAGATGGGAACAAAAATTCATTGATGAAGCTGTAGACTTTCTAACGGAGACCATAGATGATGATCCGGAATGTAGTTACCTTGAGAAAGAAAAAGTGAGAGCAGTTACACGAATGTTATTGGTGCCATTGAGATCTGAGACCCTGGTTCTTCAAAAAAAATTGCAAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCCCATCAAGATAGGGTGTTATCAAATGCCAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCGATTGGTGCTCACTGCTCAGATAGAAACTTCTGCTATAAAATGATTGAAGAATTACATGATCCCTGGATTAAGAGGTTGCTTGTGGGGTTTGCACGTACATCTGATAATAATGGGCCTAGAAAGCCAGATAGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTGAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGGAATTTTGACCCTGCGAAATTGCTCACTGACTCGGGAAAGCTCCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGCGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGAGATCTTTTAGCTCCTGAGGATGTTGTATCATTGCTTCTAGATGATGTTCAATTGGAACAGAAATTAAAGGAAATCCCTCTTCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGGGGTATTCGGGTAAATGAAGACGGTGATGCATCGATGGAAGATCTAACAAGCTCTGTAGCCCAGGGTACATCAGATAATGATCTTTCCATGGATCCAGAGGGTTCAAAGTCTAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCCAACTTCAAGGCCAAAGAACTCTCAAAAGATGAGTGAATTTAGTACTATGCCTATGGACGGTGAACTGGATGATCTTGATCCAGTGGGTCAGAAACCCAAGAGACCCAAGAGGATAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTTGGACTGCTAGCTTGGTCCCAGAGCAGTCCCAGTTTCCACCTCCACGAGATTTTAGTGTCGGGGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4596 0.4212 MDHRPKSKDSLSYSTLFNLEPLMNFQLPKQDDDFDYYGNSSQDESRDSEGGGITNHGNGNVHEKEVNLFKKRRWSLNSDNKEKTSFYGAHMTEERYRSMLGEHIQKYKRRFKGTLSSPAQNQAAAPLVKSNTGLKARKSGNEHRGGGLHVAESTSEWMNDSSSQKPGNYRDADFSPQYGTDRIMYEPASLDIGDGIIYKIPPVYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAIPQFESLQARLKVMSASNSAHKFSLKMSDVDLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKIWANIVRRDIPKHHRNFTIFHRKQLIDAKRVSETCQREVRMKVSRSLKWTRTVGMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKEDEDADDQDALVDSSDVMPDEEVDPEEAELKKEALKAAQEAVSKQRMLTSAFDIECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSATSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGEMEDVYYSGGHNPISYEIPKLVYQEIIQSSETLSSAVGPVVSRESFHKHFNIFRPENVYRSVFSEDMYSKSGNFGFTHMMDLSPQEVTFLATGSFMERLLFSMMRWEQKFIDEAVDFLTETIDDDPECSYLEKEKVRAVTRMLLVPLRSETLVLQKKLQTGPSHAPFEALVVPHQDRVLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFCYKMIEELHDPWIKRLLVGFARTSDNNGPRKPDSPHHLIQEIDSELPVSQPALELTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASMEDLTSSVAQGTSDNDLSMDPEGSKSSNKKRKAASDKPTSRPKNSQKMSEFSTMPMDGELDDLDPVGQKPKRPKRIKKNVNEKFEDAFTWTASLVPEQSQFPPPRDFSVGGSKAESGQDN* 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1141 1531 PANTHER HELICASE SRCAP-RELATED 17 1485 - -
Gso19g1141 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 819 IPR027417 -
Gso19g1141 1531 CDD SF2_C_SNF 1197 1329 - -
Gso19g1141 1531 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 603 774 IPR014001 -
Gso19g1141 1531 Pfam Helicase conserved C-terminal domain 1209 1318 IPR001650 -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 115 173 - -
Gso19g1141 1531 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1209 1393 IPR001650 -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 1434 1449 - -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 1411 1433 - -
Gso19g1141 1531 Coils Coil 428 467 - -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 1389 1491 - -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 1504 1531 - -
Gso19g1141 1531 SMART helicmild6 1235 1318 IPR001650 -
Gso19g1141 1531 Gene3D - 587 828 IPR038718 -
Gso19g1141 1531 SMART ultradead3 587 782 IPR014001 -
Gso19g1141 1531 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1485 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Gso19g1141 1531 MobiDBLite consensus disorder prediction 41 55 - -
Gso19g1141 1531 Gene3D - 829 898 IPR027417 -
Gso19g1141 1531 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Gso19g1141 1531 Gene3D - 1177 1427 IPR027417 -
Gso19g1141 1531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1386 IPR027417 -
Gso19g1141 1531 Pfam SNF2-related domain 606 893 IPR000330 GO:0005524|GO:0140658
Gso19g1141 1531 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Gso19g1141 1531 MobiDBLite consensus disorder prediction 154 170 - -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 1389 1410 - -
Gso19g1141 1531 MobiDBLite consensus disorder prediction 30 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1141 Gso-Chr19 39624038 39636096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1141 612 901 RAD5 or RAD16-like Gene Family AT5G43530 29.167 3.40e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso19g1141 SNF2_N 4.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1141 K11665 - gmx:100780615 2974.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1141 19 39624038 39636096 Gso3g1144 3 36806132 36818799 GST