Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1124 ATGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCCATCGGCAACTGCGAGATTACGGTGGAGGCCAACCGCTTCACCTGCAACTCCGATTCAAACGGCGTCGTAATCTCTCTTCCCCGAAGCGGAAAGATCAAAGTGTCTGCAGCAGTGGCTGCAAACCGTGGAAGCGCTTCTGAGGATTTTAGGTCCGGTGATAAAGAACACGAGTTTGTGCTAGTTAATCCTAAAGATGTTGATGCTATTAGCAAATCCTACCTTCAGGAAGTATTACAAATGTATATGACGGAGCTACCTGGAATGAATTATGCTGCAAATACGGGAAAGCAATCAAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGTACACTACTTATCAAATCCACTTCTGTTGGAATTTCAGGAAAGGTTATAGCTGCAATTACATACCAAATCATCCCTGCAGATACAGAATATGCTGAGATCCCACTTGCAGCTGTCAATGCATTCTATCAACGGAAGGGTTTTGGTCATCTATTGTTTCTAGAACTAAGGAAGAGACTCCAAAGTGTTGGTGTTCGTTCTATTTTATGCTGGGGGGACAAAGAATCAGAACGATTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGGTACAAAAGGAAGGGCCCGCAGGTTACCCGTAAAAGCTGATATTCAAAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACCTTGGGAAAGAATTCTTAGCTGACGATGCTAACACTGTGAAGTATCTCCCCTCACAGTTTCATCAGAATTCCTTTGCATCTGTCATTGCTGGAGATGAACAGCTAGAATTTTCAGGAAAGTTACATGTAGATTTGAAATTTCCAGATAAATCTTCCCATAGAATAGAATCAGGTAAAGATCAACATGAAGCTTTGGTGAAAGATGGATCTTCAACAGAATATGACAAACTCAGTGAATTTGACAGTCACAAGGCTAAGGCATGCTGCACTGCCATTGCTCCTTTTGCCAAAATAAATTATAATAGACGGGCCAGTGCAGAAAGTTCACAGGATGGAATTGATGCTAATGTGAAGTATTCTTCTCAATCTACAAAAGGTTCAAAGAGGGCCTGGGAAGCCTCTTTATCTTCATTGAAGTCAAAAAGGGTGAAGGGGAGCCAGATGGTTGACTATCAACAAGATTCTAGCTGCGGTTTTATCTTAGAGACTGATAAGGCCAATCCTTGTTTTGGAGAAGTCCCTCATGATCCTTCAATTACAAAAAGTTCCGAAAAATGTATCGGGGATCATTTGCCATCAACTAAACAAAGCTTTAGAATTATGTTGATGAATATTGCTGATGATACTAAGAAAACACAACTTACAAAGGTGATTGAAGACCTTGGTGGAACTATATCCCATGATGGAAGTATGACCACACACGTTGTCACCGGAAAAGTGAGGAAGACTCTGAATTTCTGTACCGCCCTCTGTTCAGGTGCTTGGGTGATTTCATCAAGTTGGTTAAAAGAAAGTTTTCGTGAAGGCAGATTTGTTGATGAACTGCCTCACATACTGAATGATACAGATTATCTGCTGAAGTACAAATCTGATTTAAAAAGTGCAATTCTCCGGGCAAAAGTTAGCCCTCATGCTTTGTTTAAGGGTTATAATATATGTATTGCAGCTCATGTTCAAACTCCTAAAATATTGTCTGCAATTGTCAGGTCTGCAGGTGGTAATGTTATCAGTGGACTCGAAAAGGTAAACGAATCATCAACAACAATCTTTGTGGCATGCGAAGAAGACACAGAAGAAGCAATGATAGCTGCACAGAAAGGTATATGGACTTTCAGTAGCGAGTGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCTCCCAGTTTGCAGCGTCCTTATAA 1923 0.4108 MAPKRKPSSPISIGNCEITVEANRFTCNSDSNGVVISLPRSGKIKVSAAVAANRGSASEDFRSGDKEHEFVLVNPKDVDAISKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLIKSTSVGISGKVIAAITYQIIPADTEYAEIPLAAVNAFYQRKGFGHLLFLELRKRLQSVGVRSILCWGDKESERFWLKQGFVEIAQVGTKGRARRLPVKADIQKSLCFLGGSTLMVCHLGKEFLADDANTVKYLPSQFHQNSFASVIAGDEQLEFSGKLHVDLKFPDKSSHRIESGKDQHEALVKDGSSTEYDKLSEFDSHKAKACCTAIAPFAKINYNRRASAESSQDGIDANVKYSSQSTKGSKRAWEASLSSLKSKRVKGSQMVDYQQDSSCGFILETDKANPCFGEVPHDPSITKSSEKCIGDHLPSTKQSFRIMLMNIADDTKKTQLTKVIEDLGGTISHDGSMTTHVVTGKVRKTLNFCTALCSGAWVISSSWLKESFREGRFVDELPHILNDTDYLLKYKSDLKSAILRAKVSPHALFKGYNICIAAHVQTPKILSAIVRSAGGNVISGLEKVNESSTTIFVACEEDTEEAMIAAQKGIWTFSSEWFMNCVMRQELDLEASQFAASL* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1124 640 SUPERFAMILY BRCT domain 442 525 IPR036420 -
Gso19g1124 640 SMART BRCT_7 548 627 IPR001357 -
Gso19g1124 640 SMART BRCT_7 436 513 IPR001357 -
Gso19g1124 640 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 438 521 IPR001357 -
Gso19g1124 640 Pfam BRCA1 C Terminus (BRCT) domain 549 624 IPR001357 -
Gso19g1124 640 PANTHER N-ACETYLTRANSFERASE 4 640 - -
Gso19g1124 640 Pfam Acetyltransferase (GNAT) family 134 207 IPR000182 GO:0016407
Gso19g1124 640 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 640 - -
Gso19g1124 640 SUPERFAMILY BRCT domain 541 629 IPR036420 -
Gso19g1124 640 Gene3D BRCT domain 548 639 IPR036420 -
Gso19g1124 640 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 76 227 IPR000182 GO:0016407
Gso19g1124 640 CDD BRCT_PAXIP1_rpt6_like 550 630 - -
Gso19g1124 640 Gene3D - 67 220 - -
Gso19g1124 640 Gene3D BRCT domain 433 547 IPR036420 -
Gso19g1124 640 ProSiteProfiles BRCT domain profile. 546 629 IPR001357 -
Gso19g1124 640 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 70 212 IPR016181 -
Gso19g1124 640 CDD NAT_SF 136 193 - -
Gso19g1124 640 ProSiteProfiles BRCT domain profile. 440 523 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1124 Gso-Chr19 39409294 39415877 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso19g1124 RTT107_BRCT_5 1.3e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1124 - - gmx:100819647 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1124 19 39409294 39415877 Gso3g1130 3 36610775 36617502 GST