Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1113 ATGGTTGCTTTGTTTACTCCTACTGTGTTCTCAACCAAGGGATGGCTCTTAGAGGAGGAGCCATTAAGCTATGATGTGTCCTCAAAGAACTCATTTCCCTATCAATTTTATTCACTACAGACACAGATTGAGGTTGAAATAGAAAGGTCAACTGCACCATCCCCTGATGACCCTGCCATGGTCAAGAAGCTTAGCCACAACGATAGTGAACGTGATCGCCGCAAGAAGGTCAATAATCTGGTTTCTTCACTTCGTTTACTTCTTCCAGTGGAAGATCAAACGAAAAAAATGAGTATTCCGGCGACAGTTTCGCGAGTCTTAAAATACATACCTGAGTTGCAACACCAAGTGCAAGCACTAAATAAGAAAAAAGAGGAGCTTCTGTGCAGAATTTCAAAAAATCTCAAAGGAGATTCAGTGAACAAAGAATCTCAAAGGAGAATTGCCCACCACAATTCTGATTTTGTTGTTTCGACTAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCTTTTTATGAGGTTCACAAGGTTCCACTATCCGAGATCTTGCACTGTTTAGAAAATAATGGCCTTCTTCTGCTAAATGCTTCTTCCTCTGAAACCTTTGGTGGAAGGTTCTTCTACAACTTGCATTTCCAGGTGGAAAAAGCTCATAGATTAGAGTCCGAGATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGGATTTTCTAA 726 0.4022 MVALFTPTVFSTKGWLLEEEPLSYDVSSKNSFPYQFYSLQTQIEVEIERSTAPSPDDPAMVKKLSHNDSERDRRKKVNNLVSSLRLLLPVEDQTKKMSIPATVSRVLKYIPELQHQVQALNKKKEELLCRISKNLKGDSVNKESQRRIAHHNSDFVVSTSRLNDCEAVVHISFYEVHKVPLSEILHCLENNGLLLLNASSSETFGGRFFYNLHFQVEKAHRLESEILTEKLLSIYEKQRIF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1113 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
Gso19g1113 241 SMART finulus 67 119 IPR011598 GO:0046983
Gso19g1113 241 Coils Coil 110 130 - -
Gso19g1113 241 MobiDBLite consensus disorder prediction 61 75 - -
Gso19g1113 241 CDD bHLH_AtORG2_like 62 136 - -
Gso19g1113 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Gso19g1113 241 Gene3D - 57 144 IPR036638 GO:0046983
Gso19g1113 241 MobiDBLite consensus disorder prediction 50 75 - -
Gso19g1113 241 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
Gso19g1113 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gso19g1113 241 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1113 Gso-Chr19 39269189 39271561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1113 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.400 1.82e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1113 HLH 5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1113 - - gmx:100790212 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1113 19 39269189 39271561 Gso3g1119 3 36453744 36455920 GST