Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1112 ATGGTTGCTTTGTTTTCTCCTCCAGTGTTCTCAACCAAGGGATGGCTTTTAGAAGAGGAGCCATTAAGCTATGATGTGTCTTCGGAGTACTCATTTCCCTATCAATTTTATTCACCACAGACACAGATTGAGGTTGAAATAGAAAGCTCAACTGCACCATCCCCTGATGACCCTGCCATGGTCAAGAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGATCAATAACTTGGTTTCTTCACTTCGTTCACTTCTTCCGGTGGCTGATCAAACGAAAAAAATGAGCATTCCGGCTACAGTTTCGCGAGTCATAAAATACATACCTGAGTTACAACAGCAAGTGCAATCACTGACTAAGAAAAAAGAGGTGCTTCTTTGGAGAATCTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCAAAGGAAAATTTCCCAACACAACTCTGAATTTGTTGTTTCAACAAGTAGGCTCAACGACTGTGAAGTTGTTGTTCACATTTCTTATGAGGCTCAAAAGGCTCCACTATCCGAGATCTTGCACTGTTTAGAAAATAATGGTCTTTATTTGCTAAATGGTTCTTCCTCTGAAACCTTTGGAGGAAGGGCTTTCCACAACTTGCATTTTCAGGTGGAAAAAACTCAGAGATTAGAGTCCGGGATTCTAACTGAGAACCTTTTGTCAATATATCAGAACCAAAGGATTTTATAA 723 0.4108 MVALFSPPVFSTKGWLLEEEPLSYDVSSEYSFPYQFYSPQTQIEVEIESSTAPSPDDPAMVKKLSHNASERDRRKKINNLVSSLRSLLPVADQTKKMSIPATVSRVIKYIPELQQQVQSLTKKKEVLLWRISRQLQGDAVNKESQRKISQHNSEFVVSTSRLNDCEVVVHISYEAQKAPLSEILHCLENNGLYLLNGSSSETFGGRAFHNLHFQVEKTQRLESGILTENLLSIYQNQRIL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1112 240 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 236 IPR015660 GO:0003700|GO:0006357
Gso19g1112 240 Gene3D - 56 154 IPR036638 GO:0046983
Gso19g1112 240 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 236 - -
Gso19g1112 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Gso19g1112 240 CDD bHLH_AtORG2_like 62 135 - -
Gso19g1112 240 Pfam Helix-loop-helix DNA-binding domain 62 114 IPR011598 GO:0046983
Gso19g1112 240 SMART finulus 67 119 IPR011598 GO:0046983
Gso19g1112 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 132 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1112 Gso-Chr19 39262768 39265617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1112 1 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.161 2.87e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1112 HLH 7.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1112 - - gmx:100803424 413.305