Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1097 ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCTCTGGATTACCTCAACCTCCTCATCAACGGGCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGTCGTCTGGTCCACGCGCACCGCTGCATACTCGCGGCGAGGAGTCTCTTCTTCAGAAAATTCTTTTGTGGGCCGGACCCACCGTCCGGCCTCGACCCCACCGGACCGCGAGGAGTTAACTCCTCGCGATCCGGAGGGGTCATCCCAGTCAACTCGGTTGGCTACGAGGTCTTTCTCCTCATGCTCCAGTTTCTATACAGTGGCCAAGTCTCCATCGTGCCTCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGGGGATGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTCGGGGTCGAACAGCTCGCATTACTCACTCAGAAACAACTGGCGAGCATGGTAGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGTTGGCATCAAGAAAGCAAGACATGCAGCAACTATGGGCAACATGTTCCCACTTGGTGGCAAAATCAGGTCTTCCTCCAGAGGTTCTAGCAAAGCACTTACCAATAGACATTGTGGCGAAAATCGAAGAGCTCCGTCTCAAATCCTCCCTGGCACGCCGCTCATTGGTGCCTTCTCACCACCACCATCACCACCACCACCACCACCACGCGGCGGCGGCACTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGACGTTGAACTGGTGAAGCTAATGGTAATGGGAGAAGGCCTAAACCTCGACGAGGCTTTGGCCTTACCCTACGCAGTGGAGAATTGCAGCAGAGAAGTGGTGAAGGCCTTACTGGAGCTTGGTGCAGCCGACGTTAACTACCCGTCGGGTCCCGCCGGGAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCCCCCGATATGGTGGCGGTGCTTCTTGACCACCACGCGGACCCCAACGTCAGAACTGTCGATGGGGTCACCCCTCTAGACATCCTCAGAACCCTAACCTCGGATTTCCTCTTCAAGGGTGCTGTCCCCGGATTGACCCACATCGAGCCCAACAAGCTGAGGCTGTGCTTGGAGCTTGTTCAATCCGCGGCTCTCGTCATGTCGCGAGAAGATGGCAATAACGCCAACAACAACAACAACAACAATGCTACTAATAATTCAGCAGCACCCATTTACCCTCCACCAATGAACGAGGATCACAACAACAACAGCAGCAGCAGCAGTGGCAACAACAACAACAACATTGGTAACCTTAACTTGGATTCGAGGTTGGTGTATCTCAACCTTGGTGCCACCGCTTCAATGAGTTCAAGGTTGGATAATGCTGAGGACGAGAGAGAAGCCATGAACCAAACCATGTACCATCATCACCACTCTCATGACTACTAG 1467 0.5515 MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGPRGVNSSRSGGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHHHHHAAAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREDGNNANNNNNNNATNNSAAPIYPPPMNEDHNNNSSSSSGNNNNNIGNLNLDSRLVYLNLGATASMSSRLDNAEDEREAMNQTMYHHHHSHDY* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1097 488 ProSiteProfiles BTB domain profile. 25 106 IPR000210 GO:0005515
Gso19g1097 488 Gene3D Potassium Channel Kv1.1; Chain A 3 192 IPR011333 -
Gso19g1097 488 SMART ANK_2a 279 309 IPR002110 GO:0005515
Gso19g1097 488 SMART ANK_2a 314 343 IPR002110 GO:0005515
Gso19g1097 488 PANTHER REGULATORY PROTEIN NPR5 1 484 - -
Gso19g1097 488 SUPERFAMILY Ankyrin repeat 273 357 IPR036770 -
Gso19g1097 488 Coils Coil 458 478 - -
Gso19g1097 488 MobiDBLite consensus disorder prediction 396 441 - -
Gso19g1097 488 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 484 IPR044284 GO:0099402
Gso19g1097 488 Pfam BTB/POZ domain 16 108 IPR000210 GO:0005515
Gso19g1097 488 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
Gso19g1097 488 SMART BTB_4 25 159 IPR000210 GO:0005515
Gso19g1097 488 Gene3D - 237 362 IPR036770 -
Gso19g1097 488 CDD BTB_POZ_NPR_plant 8 159 - -
Gso19g1097 488 ProSiteProfiles Ankyrin repeat region circular profile. 314 344 - -
Gso19g1097 488 Pfam Domain of unknown function (DUF3420) 194 256 IPR024228 -
Gso19g1097 488 Pfam Ankyrin repeats (3 copies) 262 344 IPR002110 GO:0005515
Gso19g1097 488 SUPERFAMILY POZ domain 9 157 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1097 Gso-Chr19 39075036 39078760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso19g1097 BTB 8.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1097 K14508 - gmx:100816086 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1097 19 39075036 39078760 Gso3g1102 3 36256898 36260576 GST