Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1090 ATGGGTAGCAGAAGTAGAACGGTAAACGTTAACACTAAGGACACTAACAAGGTTCTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTAATTCCATAGCCATGGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGCGTTGAAGATACCATTAATCTTAGCAGAAATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAGTCAATTGCAACATCAGATATAAACCTCTCTGCTGCTATTGCTGGGTCTCAAGCATTGGTATTACAAAAAGATTCACAACCAACTCTGGCTTCAACATCTGCTGGTCGTGAGAACTGGGGAGAGACCAACTTGGCTGATGCTAGCCCTAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAGGCCTGAAAGGGGTGAATCCAGTGGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCACGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACACAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCATCCGAACTACTCAAGCTTCTTGAAAGTCAGTTGGAGCCTTTAACCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTGTCTGAGACATTGGCTAATGGTTCACCCAGCACATCAGGCTCCTCGGGAAATGTGGCAAGTTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGATGGGTTTCTTCGCCAGGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCAGCTCGAGCTCTTCTCGCCATCAGTGATTATTTCTCACGGCTGCGAGCTCTGAGTTCTTTGTGGCTTGCTAGGCCAAGGGAGTGA 1380 0.4486 MGSRSRTVNVNTKDTNKVLNGMPSYAPPLPSSNSIAMEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPMFNQMKSNSQALGADIQFGALNKSIATSDINLSAAIAGSQALVLQKDSQPTLASTSAGRENWGETNLADASPRTDTSTDDTEDKNQRPERGESSGSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLESQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPSTSGSSGNVASYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1090 459 SUPERFAMILY Leucine zipper domain 174 217 IPR046347 GO:0003700|GO:0006355
Gso19g1090 459 Coils Coil 193 220 - -
Gso19g1090 459 Pfam Seed dormancy control 257 331 IPR025422 GO:0006351|GO:0043565
Gso19g1090 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Gso19g1090 459 CDD bZIP_HBP1b-like 174 226 - -
Gso19g1090 459 MobiDBLite consensus disorder prediction 146 176 - -
Gso19g1090 459 SMART brlzneu 170 233 IPR004827 GO:0003700|GO:0006355
Gso19g1090 459 PANTHER TRANSCRIPTION FACTOR TGA9 61 459 - -
Gso19g1090 459 MobiDBLite consensus disorder prediction 123 176 - -
Gso19g1090 459 PANTHER TGACG-SEQUENCE-SPECIFIC DNA-BINDING PROTEIN TGA-2.1 61 459 - -
Gso19g1090 459 ProSiteProfiles DOG1 domain profile. 239 456 IPR025422 GO:0006351|GO:0043565
Gso19g1090 459 MobiDBLite consensus disorder prediction 123 145 - -
Gso19g1090 459 Pfam Basic region leucine zipper 170 216 IPR004827 GO:0003700|GO:0006355
Gso19g1090 459 Gene3D - 173 225 - -
Gso19g1090 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1090 Gso-Chr19 38906558 38912838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1090 138 459 bZIP Transcription Factor Family AT3G12250 74.018 3.96e-171 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g1090 DOG1 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1090 K14431 - gmx:778136 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1090 19 38906558 38912838 Gso3g1095 3 36084029 36090363 GST