Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1081 ATGCCTTACACGGTCCGCGAGAACCTTTCGATCGGGAACATCGGCGACGCGGCGGAGATTCTCGAAAACGGCGCCGTCCAGAGCGTGACACACATCCTCTCCGTCCTCAGCTCCGCCTCCATCTCCTTCTTCTCCGAATGGAAAACCACTCTCTCCATCCCCGCCAAGGAGATCACCAAAGTCCACGCGGCGGACGCCGCCGCCAAATCGGCGCTCCCGCCGGAGAAGCTCCTCTACTCTCTCGAGTACGCCGGCCGCGACCTCAAGCTCGTGCGCATGGCCGTGCCTCTCAGAGACACCGAGAAGGAGGACCTGCTCGATTACTTGGAAGCCTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTTCACTGTTTTGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCGTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGTCCCAATGATGGTTTTTTAGAGCAGTTGAAAATGTTCGAGGGGATGGGTTTTAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAATTACTATATGAGAATCATTTCTCAGGGTTGAGGATAGACAGTTCTAAACTTGGTGCAGATCCTGGTATGCCTGTTGAAGTTTCTTCAGAGGCAGAAGAAACTACTAAAGTAGGAAATAATCGTAGGCCTACATATCGCTGTAAGAAGTGTCGACGACTTGTTGCATTGCAAGAACATGTCATAGACCATGTTCCTGGTGAGGGTGAGAGAGCCTTTGAGTTCCACAAACGGAGAGGTGGCAACCCTTTCAACAAATCTGATGAATTTGAGTGTTCATCCATATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCAATGGAGGGAAAACTGTCCTGTGCACATTGTGATGCCCGTTTGGGATACTTCAATTGGTCAGGCATACAATGCAGCTGTGGAAGCTGGATCACTCCAGCTTTTCAACTCCACAAAGGCCGGATAGACATAAGCCCCATGTAA 1065 0.5023 MPYTVRENLSIGNIGDAAEILENGAVQSVTHILSVLSSASISFFSEWKTTLSIPAKEITKVHAADAAAKSALPPEKLLYSLEYAGRDLKLVRMAVPLRDTEKEDLLDYLEACIDFIDRGRKEGSVLVHCFAGVSRSAAVITAYLMRTERLSVEDALESLRQSCEFVCPNDGFLEQLKMFEGMGFKVDHSSPIYKRFRLKLLYENHFSGLRIDSSKLGADPGMPVEVSSEAEETTKVGNNRRPTYRCKKCRRLVALQEHVIDHVPGEGERAFEFHKRRGGNPFNKSDEFECSSIFIEPLRWMKAVEEGAMEGKLSCAHCDARLGYFNWSGIQCSCGSWITPAFQLHKGRIDISPM* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1081 354 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 350 - -
Gso19g1081 354 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 183 IPR029021 -
Gso19g1081 354 Gene3D Protein tyrosine phosphatase superfamily 4 202 IPR029021 -
Gso19g1081 354 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 161 IPR000387 GO:0016311|GO:0016791
Gso19g1081 354 SMART dsp_5 1 182 IPR020422 GO:0006470|GO:0008138
Gso19g1081 354 Pfam Dual specificity phosphatase, catalytic domain 91 180 IPR000340 GO:0008138|GO:0016311
Gso19g1081 354 ProSitePatterns Tyrosine specific protein phosphatases active site. 127 137 IPR016130 GO:0016311|GO:0016791
Gso19g1081 354 CDD DSP_DUSP12 5 187 - -
Gso19g1081 354 PIRSF DUSP12 4 72 IPR016278 GO:0006470|GO:0008138
Gso19g1081 354 PIRSF DUSP12 85 354 IPR016278 GO:0006470|GO:0008138
Gso19g1081 354 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 185 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1081 Gso-Chr19 38788718 38793219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1081 90 180 Protein tyrosine phosphatase (PTP) family AT3G06110 38.043 1.20e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1081 K14819 - gmx:100804683 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1081 19 38788718 38793219 Gso3g1083 3 35943333 35947854 GST