LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g1080	ATGGGACTGTGTCATGGAAAACCCATTGAAACCTCACAAAGTGAAGGTGGGCACCACGCTTTCCCCGGCGGCGAGAAAGATGCGGTGGTGGTTTCGGCGGCAAGTCCGAAAACCGCCACAAAAGGCTCAAAGTTTCCGTTTTACAGCCCAAGCCCGTTGCCGAGCCTGTTCAAGAACTCGCCAGCGAACTCGAGCGTGAGTTCGACCCCTCTGCGGCTCTTCAAGCGGCCCTTTCCGCCTCCGTCGCCGGCGAAGCACATTCGGGCCTTGCTGGCCCGGCGCCACGGCTCCGTGAAGCCCAACGAAGCCTCCATCCCCGAAGGAAGTGAGTGTGAGGTTGGGCTCGACAAGAGCTTCGGCTTCTCCAGCCACTTCCAAGCTCACTTTGAGCTTGGGCCCGAGGTTGGCCGTGGTCACTTTGGCTACACCTGCTCTGCCAAGGGAAGGAAAGGCACCTTCAAGGGCCATGATGTTGCTGTCAAAGTCATTCCAAAATCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCAAGCTCTGACTGGGCATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGACAATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCCAGAATTGTTATGATTCAGATATTAAGTGTGGTGGCTTTCTGTCATCTGCAGGGTGTTGTTCATCGTGATCTCAAACCAGAGAATTTTCTCTATATTTCTAAGGATGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGGTATGGCCTATTGCATGTCTATATTTTCTCTTATTTTTTTTACAGAAAATAAAACAACCAGGGCTAACAATCAGAAGTTTTTTGCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCGTATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCCGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGAGGAAGCTCCTTGGCCATCGTTATCAGCTGACGCAAAAGATTTTGTGAAGAGACTGTTGAATAAGGATTATCGTAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTTGTGAATCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAACTTATATATGTTCATCTTCATTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACACTAGTGCAGCTAGCATATCTGAGAGAACAATTCAATATGTTAGGGCCAAACAAAAGTGGGTTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACCAATGCCTCAAAGGATTCACGTGTCTTAGATTATGTGAACATGGTTAGTTCAATTCAATATCGGAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCGTACGAGATGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCTTCGGAACTTGGGCTTAGCCCTTCAGTGCCTATTCATGTGGTACTCCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGCTTCTTGGGGTTTGTTAGGCTTCTGCATGGAGTTTCTTCTCGCACATTTCAGAAGGCTTGA	1839	0.4508	MGLCHGKPIETSQSEGGHHAFPGGEKDAVVVSAASPKTATKGSKFPFYSPSPLPSLFKNSPANSSVSSTPLRLFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSSHFQAHFELGPEVGRGHFGYTCSAKGRKGTFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILQALTGHKNLVQFYEAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPENFLYISKDENSTLKVIDFGLSDYVKPGMAYCMSIFSLIFFTENKTTRANNQKFFADERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHCDDVKIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTAILRSATNASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYEMFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA*	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso19g1080	612	SUPERFAMILY	EF-hand	450	603	IPR011992	-
	Gso19g1080	612	Pfam	Protein kinase domain	130	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso19g1080	612	ProSiteProfiles	Protein kinase domain profile.	129	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso19g1080	612	PANTHER	SERINE/THREONINE-PROTEIN KINASE	33	288	-	-
	Gso19g1080	612	PANTHER	SERINE/THREONINE-PROTEIN KINASE	317	607	-	-
	Gso19g1080	612	CDD	STKc_CAMK	128	419	-	-
	Gso19g1080	612	Gene3D	Phosphorylase Kinase; domain 1	122	218	-	-
	Gso19g1080	612	SUPERFAMILY	Protein kinase-like (PK-like)	128	446	IPR011009	-
	Gso19g1080	612	Gene3D	-	440	530	-	-
	Gso19g1080	612	ProSiteProfiles	EF-hand calcium-binding domain profile.	463	498	IPR002048	GO:0005509
	Gso19g1080	612	ProSitePatterns	Protein kinases ATP-binding region signature.	135	161	IPR017441	GO:0005524
	Gso19g1080	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Gso19g1080	612	Gene3D	Transferase(Phosphotransferase) domain 1	219	438	-	-
	Gso19g1080	612	Gene3D	-	446	600	-	-
	Gso19g1080	612	PANTHER	CDPK-RELATED KINASE 1	33	288	-	-
	Gso19g1080	612	PANTHER	CDPK-RELATED KINASE 1	317	607	-	-
	Gso19g1080	612	MobiDBLite	consensus disorder prediction	1	44	-	-
	Gso19g1080	612	SMART	serkin_6	129	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g1080	Gso-Chr19	38767708	38774522	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso19g1080	1	610	EF-hand Containing Proteins	AT3G50530	66.404	0.0	853

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Gso19g1080		Pkinase	1.9e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso19g1080	-		-	gmx:100803625	1122.84