Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1078 ATGCACCACTTTGCCATGGACAACTCTCACCTCCTCCAATTCCTTCCCAACACCACCACCACCACCACCAACACCAACACCCCCTTCTTCCATGCTGCACCTCACACTCACACCATGCACCACCCCCTCTCTACTAATTCATCCAATAATACTAATTACTACCCCTTCCACCTCTCCCAAATTACCGAAACACCCTCCCACCATGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAGGCTGAGAAGAGAAGGAGGGAGAGAATCAACTCCCACCTCGACCACCTTCGCACTCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTCCAGCGGGTGAAGGAGTTGAAGCAGCAAACCTCGGAGATCACCGAGCTTGAAACCGTTCCGTCGGAGACCGACGAGATCACGGTGCTCTCCACCACCGGAGGCGACTACGCCTCCGGTGGCGGCGACGGAAGGCTCATCTTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCCGACCTCATCCCCGACCTCATAGAAATCCTCAATTCGCTTCACCTCAAAACCCTCAAAGCAGAAATGGCCACTCTCGGAGGAAGAACACGCAACGTTCTCGTGGTCGCTGCTGACAAAGAACACAGCATTGAATCCATCCATTTCCTTCAGAACTCGCTCAGGTCCATTCTGGACCGATCCAGTTCCGGCGACAGGTCGAAACGACGCCGTGGCTTAGACCGAAGACTGATGTCTTGA 756 0.545 MHHFAMDNSHLLQFLPNTTTTTTNTNTPFFHAAPHTHTMHHPLSTNSSNNTNYYPFHLSQITETPSHHDRALAAMKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTTGGDYASGGGDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLRSILDRSSSGDRSKRRRGLDRRLMS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1078 251 Gene3D - 68 134 IPR036638 GO:0046983
Gso19g1078 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Gso19g1078 251 CDD bHLH_AtAIG1_like 69 144 - -
Gso19g1078 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 133 IPR036638 GO:0046983
Gso19g1078 251 SMART finulus 79 128 IPR011598 GO:0046983
Gso19g1078 251 PANTHER TRANSCRIPTION FACTOR BHLH30 9 250 IPR045847 GO:0003700|GO:0006355
Gso19g1078 251 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 9 250 - -
Gso19g1078 251 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1078 Gso-Chr19 38730200 38732345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1078 53 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.649 1.57e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso19g1078 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1078 - K22484 gmx:100802566 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1078 19 38730200 38732345 Gso3g1081 3 35911832 35913541 GST
Gso19g1078 19 38730200 38732345 Gso2g1382 2 23455404 23457495 PCT
Gso2g1382 2 23455404 23457495 Gso19g1078 19 38730200 38732345 PCT