Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1074 ATGACCATGCTACCTCACCCATTTACTATGATTGCAACAATAATCATTGTTCTTGCACAAACACTTGTGGGGGTGAATTCACTTCCTGAAGCTGATAAAATAAGCAATTTGCCGGGGCAGCCACATGTCAAATTTCAGCAATATTCTGGTTACTTTTCCGTGGATAACCAAAATCAGAGAGCTTTGTTTTATTACTTTGTTGAAGCTGAAAAACACCCTACTTCCAAGCCAGTAGTCCTATGGTTGAATGGAGGTCCTGGTTGTTCATCTATTGGAGTTGGAGCTTTAGTTGAGCATGGCCCTTTCAAACCAGACAGCAATGTTCTTGTGAAAAATCATTTTAGTTGGAACAAAGTGGCAAATGTGCTATACTTGGAATCACCGGCTGGTGTTGGATTTTCCTACTCTAGCAATGCATCTTTCTATACATTAGTGACAGATGAAATTACAGCTAGGGATAATCTTGTTTTCCTGCAGCGCTGGTTCACTGAATTCCCTGAGTACTCAAATAACGACTTCTTCATTACAGGGGAGAGTTATGCTGGCCACTATGCTCCACAACTTGCACAACTTATTGTTCAAACAAAGACCAACTTTAATCTTAAGGGGATAGCAATAGGGAATCCTCTTATGGAATTTGATACTGATTTGAACTCCAAAGCTGAATTCCTTTGGTCCCATGGACTGATTTCAGATTCAACTTACGATCTCTTCACCAGAGTCTGCAACTATTCCACTATTAGGAGACAAACGATACATGGGAATCTTAGTGACGTTTGTGCAAAAATAAATGGACTGGTGTTTACTGAGGTTAGCAACTATATAGACCAATATGATGTCACTCTTGATGTGTGTCTGTCATCAGCAAATCAGCAGTCTTATGAGCTGAATCAAATGCAAGAGACACAGAAGATAGATGTTTGTGTGGATGATAAAGCAGTCACATACTTAAACAGGAAAGATGTGCAGAAGGCTCTCCATGCTAAGCTTGTTGGAGTCTCAAAATGGTCAACTTGCAGCAGAGTTCTCCATTATGACCGTCGGAATCTAGAGATACCAACCATTTCTATTCTAGGAGCACTTGTTAATTCCAACATCAGAGTTCTGGTATACAGTGGAGATCAAGATTCAGTTATCCCATTACTGGGATCGAGATCTCTGGTGAATGGATTAGCCAAGGAACTTGGACTAAATACAACAGTTGCCTATAGAGCCTGGTTTGAGGGAAAACAGGTGGCAGGATGGACACAAGTATATGGGGGCATGTTATCATATGCCACCATAAGAGGAGCATCTCATGAAGCTCCCTTTACTCAACCACAGAGATCACTCGTGCTACTTAAAGCATTTCTAGAAGGAAAGCCATTACCTGGTGTTAAATAA 1383 0.4078 MTMLPHPFTMIATIIIVLAQTLVGVNSLPEADKISNLPGQPHVKFQQYSGYFSVDNQNQRALFYYFVEAEKHPTSKPVVLWLNGGPGCSSIGVGALVEHGPFKPDSNVLVKNHFSWNKVANVLYLESPAGVGFSYSSNASFYTLVTDEITARDNLVFLQRWFTEFPEYSNNDFFITGESYAGHYAPQLAQLIVQTKTNFNLKGIAIGNPLMEFDTDLNSKAEFLWSHGLISDSTYDLFTRVCNYSTIRRQTIHGNLSDVCAKINGLVFTEVSNYIDQYDVTLDVCLSSANQQSYELNQMQETQKIDVCVDDKAVTYLNRKDVQKALHAKLVGVSKWSTCSRVLHYDRRNLEIPTISILGALVNSNIRVLVYSGDQDSVIPLLGSRSLVNGLAKELGLNTTVAYRAWFEGKQVAGWTQVYGGMLSYATIRGASHEAPFTQPQRSLVLLKAFLEGKPLPGVK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1074 460 Gene3D alpha/beta hydrolase 29 287 IPR029058 -
Gso19g1074 460 PANTHER CARBOXYPEPTIDASE 9 458 - -
Gso19g1074 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 9 458 IPR001563 GO:0004185|GO:0006508
Gso19g1074 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Gso19g1074 460 Gene3D - 355 453 - -
Gso19g1074 460 Pfam Serine carboxypeptidase 39 453 IPR001563 GO:0004185|GO:0006508
Gso19g1074 460 Gene3D - 308 344 - -
Gso19g1074 460 SUPERFAMILY alpha/beta-Hydrolases 35 457 IPR029058 -
Gso19g1074 460 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Gso19g1074 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Gso19g1074 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Gso19g1074 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Gso19g1074 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1074 Gso-Chr19 38651359 38654765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1074 313 456 Calmodulin-binding Proteins AT2G22960 29.932 8.44e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1074 K16297 - gmx:100800430 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1074 19 38651359 38654765 Gso3g1078 3 35846488 35849818 GST