Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1072 ATGGCATCTTGTTCAATCTCAGCCTCAGGCTCATGGAGTGTTAAGGACAACAAGGCCTTTGAAAAGGCTCTAGCTGTTTATGACAAGGACACCCCTGACCGTTGGTACAATGTTGCTCATGCTGTTGGCGGCAAAACTCCAGAGGAAGTGAAGAGGCACTACGAACTCCTTGTTCAGGATGTTAAGCATATTGAGTCAGGACGTGTTCCATTCCCAAATTACAAGAAAACTACTTCAGAGTCAACTGATCAGGAGGAAAAAAGGCTGAGGAATTTGAATTTGAACCTCCAGTGA 294 0.449 MASCSISASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTTSESTDQEEKRLRNLNLNLQ* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1072 97 CDD SANT 11 58 IPR001005 -
Gso19g1072 97 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Gso19g1072 97 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 94 - -
Gso19g1072 97 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Gso19g1072 97 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Gso19g1072 97 MobiDBLite consensus disorder prediction 69 97 - -
Gso19g1072 97 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Gso19g1072 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 94 IPR044636 GO:0003700
Gso19g1072 97 Gene3D - 3 71 - -
Gso19g1072 97 SMART sant 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1072 Gso-Chr19 38625412 38626494 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso19g1072 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1072 - - gmx:778061 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1072 19 38625412 38626494 Gso3g1074 3 35783074 35784340 GST