Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1071 ATGAAGTCTTGGTCACTGGACGAGTGGAGGAAGTACTTTGGGTCAGCGAATTCGGATATATTTGAGATAATTGAGCACGCCATAATTGTGGCGGCTTCGGATTGCCCAAAGGAGTTTAGAGTAAGGAGGGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGGTTGACTCGGTGTGTGGGGTGTGACCGTGTTGAGTTGGCTGTGGGTGCAGATAGTAAAGAGAAGCATGATAGTGATGGTGATGATGATAATGATAAGAGTGGGTATGAAAGAGATGGGGTTGAGTTTGAAGGTGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGGGGATGGAGGGAGGGATGTGAATCTTGGTGATAGCAATTATAGCTTTGGGGAGGCTGAGGCATTGAGTGATGAGATGGAAGAAGAGTCTCGGTATGTTGCGGAGATTTTGAGGATCAGGGATGTTCTGCTTAACCCTGAAGATGAGTCTGAGGCTGTGTTATTTGATTCATTGAGGCGGCTTCAGTTGATGGAACTCACCGTGGACTGTTTAAAGGCAACTGAGATTGGCAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAAAGATATTCGTCAACTTTCAAGGACTCTTATCGATGGCTGGAAAGAAATGGTGGATGAGTGGGTCAAGGCCACTACTACCACAGCTATCACAGGTTCAGAAGAAGGTACACCGGATTCAGTGAATCCATCTGTTGTAGATGATGATGAAGAAGAAGGACTTCCATCACCTCCCTTGGATGAAGGGGCTTTCTTTGTCACTCAGGCTGGTTCAATGGAACTGTCACAGTTCTTTGATGGCATGGACGACGACGGAAATCCTCGACCAACTGGGCCATTCAGCAAGAACCGTGAGAATGGCAGAAAGCCGGTTTTCGACAGCCATGTTGTAGAGAAGAGGAAGTCGCAGGCTTCCCATGACACAGCCATCATTGACCGGGATGTTAAGAGTCAGCAGCAAGCAAAGAAAAATGAGGCTGTTGTGCCTGAGAGGCCAAATAAACCAGTAACAGCTGATTCCGGGCCTGGCAGACCCCCAAAATCAAATATGCAGAGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATGGAGAACAATTCAATCACAAGGAGGCCTCCAACCGGTCAGCTAGATAAATCCAAGCGTTCAGATGACTCGGCAGTCCACGTGAAGCTAGAAGCCACCAAGAGGAAACTTCAGGAGAGCTATCAACAAGCTGAAAACGCCAAGAGGCAGAGGACAATACAAGTTATGGAAATAAACGATCTTCCCAAGCAAGGTTTGCACCGAAACACACATTTCAAACCTGGATATCACAATAGGCATTGGGCTAATGGTCGAAGATAA 1377 0.4684 MKSWSLDEWRKYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDGIAERLFSCRLTRCVGCDRVELAVGADSKEKHDSDGDDDNDKSGYERDGVEFEGAGASKESKVNGDGGRDVNLGDSNYSFGEAEALSDEMEEESRYVAEILRIRDVLLNPEDESEAVLFDSLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLSRTLIDGWKEMVDEWVKATTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRPTGPFSKNRENGRKPVFDSHVVEKRKSQASHDTAIIDRDVKSQQQAKKNEAVVPERPNKPVTADSGPGRPPKSNMQRKSNMEPKMQQKMENNSITRRPPTGQLDKSKRSDDSAVHVKLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHNRHWANGRR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1071 458 MobiDBLite consensus disorder prediction 442 458 - -
Gso19g1071 458 MobiDBLite consensus disorder prediction 272 398 - -
Gso19g1071 458 MobiDBLite consensus disorder prediction 100 119 - -
Gso19g1071 458 MobiDBLite consensus disorder prediction 71 92 - -
Gso19g1071 458 MobiDBLite consensus disorder prediction 437 458 - -
Gso19g1071 458 SMART TFS2_5 141 216 IPR003617 GO:0005634
Gso19g1071 458 MobiDBLite consensus disorder prediction 295 329 - -
Gso19g1071 458 MobiDBLite consensus disorder prediction 224 258 - -
Gso19g1071 458 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 226 IPR035441 -
Gso19g1071 458 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Gso19g1071 458 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 222 IPR035441 -
Gso19g1071 458 CDD TFIIS_I 142 215 - -
Gso19g1071 458 MobiDBLite consensus disorder prediction 356 384 - -
Gso19g1071 458 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 457 IPR044805 -
Gso19g1071 458 Coils Coil 399 426 - -
Gso19g1071 458 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Gso19g1071 458 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1071 Gso-Chr19 38568778 38573106 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso19g1071 Med26 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1071 - - gmx:100799367 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1071 19 38568778 38573106 Gso3g1072 3 35685627 35689909 GST
Gso19g1071 19 38568778 38573106 Gso2g1306 2 17036447 17041449 PCT
Gso2g1306 2 17036447 17041449 Gso19g1071 19 38568778 38573106 PCT