Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1067 ATGAGGGAAGACGATTCGAATTGGTTTTCGCGATGGGAAGAGGAACTTCCGTCTCCGGAAGAACTCATGCCTCTATCGCAAACCCTAATTACTCCCGATCTAGCCATGGCCTTCGACATCCGAAACCCTCACACCTCCAACACCGCACAGAATCAACACCACCACCACCACCAAAACCAACAACCACCGCAACTACAACAACCTTCGAACCCTTCCTCGCTCCCTAACCCGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACCCACCTCCGCCGAGTTCGCCGACTCCGGTGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCGGCGCGTACCCTAAAACGGCCCCGCCTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTCGACGCCGTCGCTCACCTCGGCATCAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGCGAAAACGTCGCTAGTCACTTGCAGAAGTACCGTCTTTACCTCAAGCGCATGCAGGGGATATCCTCCGCCGGTCCTGGCGGCGCCTCCGGTGCCGTCGCCGACCCCGCCACCGACCATTTGTTCGCCAGCTCGCCGGTGCCGGCGCATTTCTTGCACCCGGCCGCGAGGCCGAATTCGGATCATTTCCTGCCGTTCGTGCCGGCGCTCCACCACCACCAACAGCAGCAGCAGATGGCGGCCGCGGCGCAGTACCACCGGCAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCGTTTATGTCTAGGCCGAATCTTCAGAGGATAGGGGGTGGTGGTGGTCCTGTGCACAACAACCACCACCCTGTGAGTGGTTATGTGGAGGACATGGAGTCTGCTAATGCTGCCTCTGGAGGTAGAAAGGTTCTTACTCTGTTTCCAACTGGAGATGATTGA 939 0.5964 MREDDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHTSNTAQNQHHHHHQNQQPPQLQQPSNPSSLPNPQQQQQQQQQQQQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSAGPGGASGAVADPATDHLFASSPVPAHFLHPAARPNSDHFLPFVPALHHHQQQQQMAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRIGGGGGPVHNNHHPVSGYVEDMESANAASGGRKVLTLFPTGDD* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1067 312 Gene3D - 114 176 - -
Gso19g1067 312 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 70 IPR044841 GO:0003700|GO:0006355
Gso19g1067 312 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 79 312 IPR044841 GO:0003700|GO:0006355
Gso19g1067 312 MobiDBLite consensus disorder prediction 1 116 - -
Gso19g1067 312 MobiDBLite consensus disorder prediction 41 99 - -
Gso19g1067 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
Gso19g1067 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 173 IPR017930 -
Gso19g1067 312 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 70 - -
Gso19g1067 312 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 79 312 - -
Gso19g1067 312 Pfam Myb-like DNA-binding domain 121 169 IPR001005 -
Gso19g1067 312 MobiDBLite consensus disorder prediction 1 18 - -
Gso19g1067 312 SUPERFAMILY Homeodomain-like 114 174 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1067 Gso-Chr19 38473337 38476192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1067 1 312 G2-like Transcription Factor Family AT3G10760 58.678 3.45e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso19g1067 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1067 - - gmx:100797237 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1067 19 38473337 38476192 Gso3g1063 3 35552915 35555176 GST