Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1048 ATGGACCAACAGCAGCGCCACGTCAGCAGCGGAACTACTAATCCTGTGGCCGTGCTCCGCTTCTCCACGGGGCGCGCCTTCCCCTTCGCACGCCTCATCGCCGCCTCCCGCCGCCGCCTATTCCTCTCCGACTGCGCCGACCACCGATCGGACGACGACGGAGACAGCGACGCCGACGCCGGCGAGTGCGCGTACTCGCGCGCGGTGCTGGTGCTCGACATGGTGTGGAACCTCGCCTTCGTCGTCGCCGCCGCCGGCGTCCTCCTCTCCACGCTCCGAGAGCGGCCAGCGACGCCGCTGAGGCTCTGGCTCTGCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCGTTCGTGTACTTCGAATTCCGAACCAGAATTCGCGATTCCTTCTCTCACACTACCTATAGCATTGTGAAGAAGCTAGAGCCTATGAACACTCTGGCATCATCTGTTTGGTGGGTGTTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGAAGATTCTCCACATCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATTATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCTCTCTTCTGCATCATCCCAATAATAGCATTAGCTTATGCTATGAGAATCAGAGAAGGTGCATCAGAAGAAGATATCAGGTCACTTCCTATGTATAGGTTTAGCCTGTCAAATTCATTGGTGATGGTTGATGACAACAAGAAGCAACTTGTTAAAGTAAGAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGTCTGTGTCCATATGTTGAAGGAGAAGAACTGTATCGCCTTCCCTGTACACACCATTTTCATTGTGGATGCATCAGCCGTTGGCTTCGGACAAAAGCTACTTGCCCGCTGTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 984 0.5112 MDQQQRHVSSGTTNPVAVLRFSTGRAFPFARLIAASRRRLFLSDCADHRSDDDGDSDADAGECAYSRAVLVLDMVWNLAFVVAAAGVLLSTLRERPATPLRLWLCGYAFECVLHMAFVYFEFRTRIRDSFSHTTYSIVKKLEPMNTLASSVWWVFGFYWIVVGGQALLEDSPHLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDIRSLPMYRFSLSNSLVMVDDNKKQLVKVRVDSCNGSHMSELSLHPDDSECCICLCPYVEGEELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLV* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1048 327 CDD RING-H2_RNF111_like 275 319 - -
Gso19g1048 327 ProSiteProfiles Zinc finger RING-type profile. 276 317 IPR001841 -
Gso19g1048 327 PANTHER TARGET OF ERK KINASE MPK-1 3 327 - -
Gso19g1048 327 Pfam Ring finger domain 275 317 IPR001841 -
Gso19g1048 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 323 IPR013083 -
Gso19g1048 327 PANTHER RING-FINGER UBIQUITIN LIGASE 3 327 - -
Gso19g1048 327 SUPERFAMILY RING/U-box 269 321 - -
Gso19g1048 327 SMART ring_2 276 316 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1048 Gso-Chr19 38202837 38207387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1048 1 324 C3H Transcription Factor Family AT1G68070 41.739 9.36e-89 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1048 - - gmx:100808066 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1048 19 38202837 38207387 Gso3g1036 3 35101100 35105418 GST