Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1043 ATGGAACACCATTTTGGTCAAGGTACTACACCTGCATCTGAGTCCTTTGATAAGACTAGGGTTTTAAATGTGAAGCCCTTAAGAACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCTTCAACTCCACAAGGTGGTGCCCCTTTTGTGTGTGTTTCTCCTTCAGGCCCTTTCCCTTCAGGTGTTGCACCCTTCTATCCTTTCTTTATCTCCTCGGAATCCCAGAGGCTCTCTGAACAGAATGCGCAAACCCCATCTGGTCAACGCGTTCCTGCAGCTCCGGTATCTACTGCAGTTCCAATTAATTCATTTAGGACACCCACTGGTGCTGCAAATGGAGACGTGGGCTCATCGCAAAAGAATACCCGAAGTCGTGGATGGGTCACAGAGGAAGATGGCTATAGTAATGTTGAGATAGAGGAAATTGATGCAGATGAAGGAACTGGGACTGGGAGGTCAAAGCGCAAGTCAAATAAGAAGACTAAGGCAAGACAGAGTGGTGGTTCTGTTTCTGTTGATGTTGATCCGGATGCAGTCGCTGCTGATATTCTCAAATCACTCAATGCACTGGTTTTCGATGTACTTAGTCAACCAGAAGGTAGCAGGGATTCAGTTGCATATACACTCATGATATATGAAGTGATGCGAAGAAAGCTTGGACAAATTGAAGATTCAAATAGGGCAGCTAACTCTGGAGCAAAACGGCCTGATTTGAAGGCAGGTGCAATTATGATGAATAAAGGGATTCGGACCAACAGCAAGAAACGTATTGGAGTTGTGCCTGGTGTTGAGATTGGGGATATTTTCTTTTTCAGATTTGAATTGTGCTTAGTGGGCTTACATGCTCCTTCTATGGCTGGAATTGATTACATTGGCAAAACCAGTCAAGAAGAAGAGCCTTTAGCTGTAAGTATCGTCTCATCTGGAGGGTATGAAGATAATGTGGAGGATGGGGATGTGTTGATTTACAGTGGCCAAGGTGGGGTGAACCGTGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCATTGGAGAAGAGTGCGCATAGAGGTAATGAAGTAAGAGTAATTAGGGGTTTGAGGGATCCACAACATCCAACTGGGAAGATTTACGTCTATGATGGCCTTTACAAGATTCAAAATTCCTGGGTGGAGAAAGCAAAATCTGGTTTCAATGTATTCAAGTATAACTTAGTCAGGTTGCCCGGACAGCCTCAAGCTTATATGATTTGGAAATCCATTCAACAATGGACTGAGAAATCTGCTTCAAGAGCTGGGGTTATATTACCTGATCTTACTTCTGGGGCTGAAAATATACCTGTATGTCTTGTGAATGATGTTGATAATGAGAAGGGCCCTGCATATTTCACTTACATCCCAACTCTAAAGAATTTGAGGCCAACTGCTCCTGTGGAATCTTCTACTGGATGCCCTTGTGTTGGTGGATGTCAACCTAACAATTTTAATTGTCCTTGCATTCAAAAAAATGGAGGCTATCTTCCATATTCTTCAGCTTCGTTACTTGCGGACTTAAAATCTGTGATATATGAGTGTGGCCCTTCTTGTCAATGTCCTTCCAATTGCCGAAATCGGGTTTCTCAAAGTGGCTTGAAATTTCGTTTGGAGGTTTTCAGAACCAAGAATAAAGGTTGGGGTCTTAGATCATGGGATTCTATTCGTGCAGGAACTTTCTTATGTGAGTATGCAGGGGAAGTTGTAGATAGTGCTAGAATGGAGGAGCTTGGTGGTGACAATGAAGATGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCTGGTGATACTGAAGCTCCGAAAATCCCATCCCCGCTTTATATATCAGCAAAAAATGAAGGAAATGTTGCTCGGTTTATGAACCACTGCTGCTCTCCAAATGTATTATGGCGTCCAGTCATACGTGAAAATAAGAACGAGTCAGATCTCCACATTGCTTTCTATGCAATCAGACATATCCCGCCTATGATGGAGTTGACTTATGATTATGGGGCAGTTCTTCCTCTCAAAGTAGGTCAGAGGAAAAAGAAATGCTTATGTGGATCTGTAAAATGCAGGGGTTACTTTTGTTAA 2121 0.4276 MEHHFGQGTTPASESFDKTRVLNVKPLRTLVPVFPSPSNPASSSTPQGGAPFVCVSPSGPFPSGVAPFYPFFISSESQRLSEQNAQTPSGQRVPAAPVSTAVPINSFRTPTGAANGDVGSSQKNTRSRGWVTEEDGYSNVEIEEIDADEGTGTGRSKRKSNKKTKARQSGGSVSVDVDPDAVAADILKSLNALVFDVLSQPEGSRDSVAYTLMIYEVMRRKLGQIEDSNRAANSGAKRPDLKAGAIMMNKGIRTNSKKRIGVVPGVEIGDIFFFRFELCLVGLHAPSMAGIDYIGKTSQEEEPLAVSIVSSGGYEDNVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALEKSAHRGNEVRVIRGLRDPQHPTGKIYVYDGLYKIQNSWVEKAKSGFNVFKYNLVRLPGQPQAYMIWKSIQQWTEKSASRAGVILPDLTSGAENIPVCLVNDVDNEKGPAYFTYIPTLKNLRPTAPVESSTGCPCVGGCQPNNFNCPCIQKNGGYLPYSSASLLADLKSVIYECGPSCQCPSNCRNRVSQSGLKFRLEVFRTKNKGWGLRSWDSIRAGTFLCEYAGEVVDSARMEELGGDNEDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYISAKNEGNVARFMNHCCSPNVLWRPVIRENKNESDLHIAFYAIRHIPPMMELTYDYGAVLPLKVGQRKKKCLCGSVKCRGYFC* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1043 706 SUPERFAMILY PUA domain-like 243 425 IPR015947 -
Gso19g1043 706 Pfam SAD/SRA domain 260 410 IPR003105 -
Gso19g1043 706 ProSiteProfiles Post-SET domain profile. 690 706 IPR003616 -
Gso19g1043 706 Pfam SET domain 556 680 IPR001214 GO:0005515
Gso19g1043 706 MobiDBLite consensus disorder prediction 103 175 - -
Gso19g1043 706 SMART set_7 545 686 IPR001214 GO:0005515
Gso19g1043 706 SUPERFAMILY SET domain 444 703 IPR046341 -
Gso19g1043 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 705 - -
Gso19g1043 706 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 121 705 IPR025794 GO:0016571
Gso19g1043 706 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 705 - -
Gso19g1043 706 SMART preset_2 435 529 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso19g1043 706 ProSiteProfiles Pre-SET domain profile. 481 542 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso19g1043 706 SMART G9a_1 256 410 IPR003105 -
Gso19g1043 706 Gene3D SET domain 428 705 IPR046341 -
Gso19g1043 706 MobiDBLite consensus disorder prediction 103 127 - -
Gso19g1043 706 Pfam Pre-SET motif 439 537 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso19g1043 706 ProSiteProfiles YDG domain profile. 261 406 IPR003105 -
Gso19g1043 706 Gene3D - 243 427 IPR036987 -
Gso19g1043 706 ProSiteProfiles SET domain profile. 545 680 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1043 Gso-Chr19 38117014 38121008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1043 6 705 Su(var)3-9 homologs AT1G73100 48.276 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso19g1043 SAD_SRA 1.9e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1043 K24405 - gmx:100786650 1416.75