Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1039 ATGGGACGAGCCAGGCTTCTGGTTTCAGACTTCGTTCTGTCTTTCATGTGGGTATGGTCCGGTGTTCTCCTTCGGATCATCGTCTTCAACCACCTTGGCTTCGCTCATGGCCCCCTCGGTGAGGTTATCAAAACTACCTTCTCCATCGCCAACATGTTCTTCTTCGCCTTCCTCGTCAAGGTTACACGTGGCGGCGCCTACAACCCCCTCACCGTTCTGGCCGATGCTATCTCCAGGGATTTTAACAACTTCCTCTACTGCGCTGGTGCCAGAATCCCCACTCAGGTGGTTGGATCGATTGTTGGAGTTAAACTTCTTATTGATACCATTCCTGAAGTAGGACTGGGACCACGTCTGAATGTTGACATTCATCGGGGTGCGCTGACAGAAGGATTATTAACATTTGCAATTGTAACCATTTCACTTGGACTCGCCTCAAAAATCCGTGAAAATTTCTTCATGAAGACTTGGATCTCCAGCCTCTCCAAGTTAACACTTCATATACTTGGCTCTGATCTGACTGGTGGTTGCATGAACCCTGCATCTGTAATGGGATGGGCATATGCTCGAGGCGATCACATAACAAAGGAGCACTTCCTTGTATATTGGCTTGCTCCCATAGAAGCAACTATTTTAGCAGTGTGGACATTCAAATTTCTAGTGCAGCCTGGAAAAGAAGATAAATCAACCTCAAAAAGTAAATCGGATTGA 711 0.4684 MGRARLLVSDFVLSFMWVWSGVLLRIIVFNHLGFAHGPLGEVIKTTFSIANMFFFAFLVKVTRGGAYNPLTVLADAISRDFNNFLYCAGARIPTQVVGSIVGVKLLIDTIPEVGLGPRLNVDIHRGALTEGLLTFAIVTISLGLASKIRENFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHFLVYWLAPIEATILAVWTFKFLVQPGKEDKSTSKSKSD* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1039 236 Pfam Major intrinsic protein 5 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1039 236 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1039 236 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1039 236 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1039 236 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1039 236 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1039 236 PANTHER AQUAPORIN SIP2-1-RELATED 1 236 - -
Gso19g1039 236 Gene3D Glycerol uptake facilitator protein. 3 236 IPR023271 -
Gso19g1039 236 PANTHER AQUAPORIN SIP2-1-RELATED 1 236 IPR044226 GO:0015267
Gso19g1039 236 SUPERFAMILY Aquaporin-like 4 230 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1039 Gso-Chr19 38072988 38075425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1039 1 236 Major Intrinsic Protein MIP AT3G56950 60.338 2.49e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1039 K09875 - gmx:100786138 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1039 19 38072988 38075425 Gso16g0361 16 4065810 4071987 GST
Gso13g0319 13 14563305 14567039 Gso19g1039 19 38072988 38075425 GST
Gso19g1039 19 38072988 38075425 Gso18g2284 18 55720896 55724088 PCT
Gso19g1039 19 38072988 38075425 Gso8g2104 8 22883584 22885579 PCT
Gso18g2284 18 55720896 55724088 Gso19g1039 19 38072988 38075425 PCT
Gso8g2104 8 22883584 22885579 Gso19g1039 19 38072988 38075425 PCT