Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1035 ATGGGGAGGAAGCGAAAGGTAGCACCGAAATCTTCTGTATCCGCCGAGCCCCCGCTGAAGCAACACCAACCAAAACCCGAAAATGCCGCTCAGGAATACGAAGAAGAGGTCGAAGAGGAAGTTGAGGAAGAAGAGGTAGAGGAAGAGGTCGAAGAGGAAGAAGAAGAAGAGGAGGACGAAGAGGACGAGGAAGAAGAAGAAGAAGACCAAAAAGACCAATACCAGCACCAACAACAACAGCAAGACGAAGACGACGACCCGATCTCCAAGCTTCTGGAACCGTTGAGCAAGGACCAGCTCCTCATCCTTCTCTGCGAGGCGGCGGCCAAGCACCAAGACGTGGCTGAGAGGATCCGAAGGGCGGCCGACGAGGATCCGGTGCACCGGAAGATATTTGTCCACGGATTGGGCTGGGACACAACCGCCGGAACCCTAATCAGCTCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATTCTCTTCAAGACCCGCCGCGGCGCGCGCAACGCCCTCAAGGAGCCGCAAAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCATCCATCGGTCCGGTTAGCAACCCGCCGCAGACGGCACCGCCGGCGGTGGCGGCTCCGTCGTCGTCGGTTTCGGAGTACACACAGAAGAAGATCTACGTGAGCAACGTCGGTGCGGATCTGGATCCGCAGAAGCTTCTCGCGTTTTTCTCGCGGTTCGGGGAGATTGAGGAAGGGCCGTTGGGGCTTGACAAGGCTACCGGAAAACCTAAGGGGTTTTGTTTGTTTGTTTACAGGAGTCCAGAGAGTGCAAGGAGAGCATTGGAGGAGCCTCATAAGGATTTTGAAGGGCACATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGGCCGGGAAGTTGCAGCAGCACGGGAATGTGAATGCCCAGGCGCAGCGGGCCCAGTTTCAGAGGAATGGTAGTGTTGGTACTAATGCTGCTGCTGGGTATGGTGGTGGTGCGGCGTTGCAGCCCGGGCACTTGATGGCCCCGGCTGGGCCGGGGATTGGGTTTAATCAGTCTGCTGCTGCTGCGCAGGCCGCACTGAATCCGGCAATGGCGCAGGCGTTGACCGCGCTGCTGGCATCGCAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCAGTTAACCCTGGTGTGCCTTCTGCAGGGGCTGCGGTGCAGGGTGGTTACAGTGCTCAACCGAATATAAGTCCCGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTGCAGGTGGCGTATCCGAATCAGAATCAGAATCAGCAGATAGGGCAGGGTGGGTCCGGAAGAGGGCAATATGGTGGTGGATCTGCGCCCTACATGGGGCACTAG 1440 0.5792 MGRKRKVAPKSSVSAEPPLKQHQPKPENAAQEYEEEVEEEVEEEEVEEEVEEEEEEEEDEEDEEEEEEDQKDQYQHQQQQQDEDDDPISKLLEPLSKDQLLILLCEAAAKHQDVAERIRRAADEDPVHRKIFVHGLGWDTTAGTLISSFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASIGPVSNPPQTAPPAVAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKATGKPKGFCLFVYRSPESARRALEEPHKDFEGHILHCQKAIDGPKAGKLQQHGNVNAQAQRAQFQRNGSVGTNAAAGYGGGAALQPGHLMAPAGPGIGFNQSAAAAQAALNPAMAQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPSAGAAVQGGYSAQPNISPGVVGGYGNQVGLQVAYPNQNQNQQIGQGGSGRGQYGGGSAPYMGH* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1035 479 MobiDBLite consensus disorder prediction 455 479 - -
Gso19g1035 479 SUPERFAMILY RNA-binding domain, RBD 219 319 IPR035979 GO:0003676
Gso19g1035 479 SUPERFAMILY RNA-binding domain, RBD 121 209 IPR035979 GO:0003676
Gso19g1035 479 MobiDBLite consensus disorder prediction 71 89 - -
Gso19g1035 479 MobiDBLite consensus disorder prediction 1 89 - -
Gso19g1035 479 Gene3D - 27 209 IPR012677 -
Gso19g1035 479 MobiDBLite consensus disorder prediction 32 70 - -
Gso19g1035 479 SMART rrm1_1 130 202 IPR000504 GO:0003723
Gso19g1035 479 SMART rrm1_1 234 306 IPR000504 GO:0003723
Gso19g1035 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 316 IPR000504 GO:0003723
Gso19g1035 479 PANTHER - 14 479 - -
Gso19g1035 479 Gene3D - 220 350 IPR012677 -
Gso19g1035 479 Coils Coil 27 84 - -
Gso19g1035 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 197 IPR000504 GO:0003723
Gso19g1035 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 302 IPR000504 GO:0003723
Gso19g1035 479 PANTHER GEO13361P1-RELATED 14 479 - -
Gso19g1035 479 CDD RRM_RBM24_RBM38_like 233 308 - -
Gso19g1035 479 CDD RRM_RBM24_RBM38_like 129 204 - -
Gso19g1035 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 206 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1035 Gso-Chr19 38013501 38019728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1035 221 318 C2H2 Transcription Factor Family AT2G19380 35.354 1.77e-10 61.2