Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0999 ATGAGTTCTTCACAGCACTTGAACAATGTTGGTGAAGGTAGCAATAGAGACATGAGTTTCTTCCCTCCTTCTTCTCTTTATGTGGGTTCTTCACAAACTCCTCCTTTGTCTATGGGACATGAAAATGGGGTAGAGGGTTCAAAGCCTGAGATGGGTCTTCAGATTTTTGGGTCCACAGTGTTTCAGCCCTCGGAGTGCAGGGGAACAAAGAGAGCCAGTGATGAAGAAGGGGTTGAGATTGAGAACAGGAACTTGTGTTTAAAACTTGCTGATGAAGCACAAGCTAAGAGCTCTGCTTCAGGGAAAATCAAGCTTTGTGCTAGAGGTCATTGGAGGCCAGCTGAAGATGAAAGACTCAAGGAGCTTGTTGCTCAATATGGCCCTCAAAATTGGAACTTGATTGCTGAGAATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCTAGGATCAACAGAAGGTCCTTTTCTGAGGAGGAAGAGGAGAGACTTATTACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCAAGACTCTTCCCTGGAAGGACAGATAATGCAGTGAAGAACCACTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCACTCTAGCAGTGTGTATAGAAGGAGAAAACTTGTCGTTAATGAAACCCTTCCAAAGGGTTTGGATCTGACTCTGTCTAACAATGCAGGGAGTGAATCAACCATCTCAAGCACCATTGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTAACTCCCTCCTCAGCCAAAGTTACCCCTCCTTTTCGAAGACTCTTTGACCATCCTGGTCCATCTCAGAATCACCAAGCCTTTGGATCATTAATTGGGCAAGCTAGAGGGGATGTGAGTTTTAACAAGTTTTGTGGTGCTTCTTGGAAAGGGGTAGCATATAAAAAGGCAGATCAAGTGGGAAAGCTTAAGGGTGTGGACCAGTCTAATTTTTCAGATGCAAATTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATGTCTCAATTTCTGAAGAGAGTGAAACTGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACCTAG 1137 0.4406 MSSSQHLNNVGEGSNRDMSFFPPSSLYVGSSQTPPLSMGHENGVEGSKPEMGLQIFGSTVFQPSECRGTKRASDEEGVEIENRNLCLKLADEAQAKSSASGKIKLCARGHWRPAEDERLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLITAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREHSSSVYRRRKLVVNETLPKGLDLTLSNNAGSESTISSTIDESASTCTNLSLTPSSAKVTPPFRRLFDHPGPSQNHQAFGSLIGQARGDVSFNKFCGASWKGVAYKKADQVGKLKGVDQSNFSDANSEVSVSESVATNRSNVSISEESETVGDKINMPFIDFLGVGAT* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0999 378 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
Gso19g0999 378 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Gso19g0999 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 154 IPR017930 -
Gso19g0999 378 SMART sant 107 156 IPR001005 -
Gso19g0999 378 SMART sant 159 207 IPR001005 -
Gso19g0999 378 PANTHER MYB PROTEIN-RELATED 68 378 - -
Gso19g0999 378 MobiDBLite consensus disorder prediction 1 48 - -
Gso19g0999 378 PANTHER OS08G0435700 PROTEIN 68 378 - -
Gso19g0999 378 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Gso19g0999 378 MobiDBLite consensus disorder prediction 1 38 - -
Gso19g0999 378 CDD SANT 171 202 IPR001005 -
Gso19g0999 378 Gene3D - 108 159 - -
Gso19g0999 378 Gene3D - 162 221 - -
Gso19g0999 378 CDD SANT 111 152 IPR001005 -
Gso19g0999 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 209 IPR017930 -
Gso19g0999 378 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
Gso19g0999 378 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0999 Gso-Chr19 37491656 37494134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0999 105 232 MYB Transcription Factor Family AT1G26780 78.906 3.05e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g0999 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0999 K09422 - gmx:100791795 736.487