Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0979 ATGGCAAATAGGCACCACCCCTCAGTGTTTCTGGTGTTGGTTACTGTTTTACTTTCTATCCATTGCTCTGAGCAATTGCAATCCTCTCACTCTCAGACTCTTCTCAGAATTCAGCAGCTATTGAACTTTCCTGCTGCTTTAAGCAACTGGAACAGCAGCACAGACTTTTGCAACACAGATTCAAACTCTTCCCTCACTGTAGTGTGCTATGAAGACACCATAACACAGCTTCACATAATAGGTGAAAGAAGAGATACACCTCTCCCTCGAAATTTCTCAATAGATTCCTTTGTCACAACACTAGTAAGGCTTCCCAGTTTGAAAGTCCTCACATTGGTTTCTCTTGGTATATGGGGTCCTTTGCCTAGTAAGATAGCTCGTTTGTCATCCCTGGAAATAGTTAACATGAGTTCCAATTTTCTCTATGGTTCAATTCCTCAGGAACTTTCATCACTGTCAAGTCTCCAAACACTCATTTTTGACAACAACATGTTGGCTGACACGTTTCCTCATTGGCTTGATTCACTTCAAGCCTTAACTGTGTTAAGTTTGAAGAATAACAAGTTCAATGGATCTCTACCAAAATCGCTTGGTAATGTGGAGAATTTGAGAACCCTTTCACTTTCTCATAATCACTTTTATGGGGCGGTGCCTGATTTGAGCCGTTTGACGAATCTTCAAGTGCTTGAATTGGATGATAATGCTTTTGGACCGCAGTTTCCTCAGCTCGGTAACAAGTTGGTTATACTAGTTCTAAGAAAAAATAGCTTCAGGTCTGGTATTCCTGCTGAATTGAGTTCATACTATCAGCTTGAGCGATTGGATATTTCATCAAATTCATTTGTGGGGCCTTTTCAGCCAGGATTGTTGTCACTTCCTTCTATTACTTATCTGAATATTTCTGGGAACAAATTAACCGGGATGCTTTTCGAGAATCTTTCTTGCAATTCTGAGCTTGATGTAGTGGATTTATCCTCAAATCTTTTGACTGGGAGCTTACCTAGATGTTTAGTGTCAAATTCCAGCGATAGCACTGTCCTGTATGCTAGAAATTGTCTAGACACCACGAATCAAAATCAGCAGCCGCAGCCCTTTTGCCACACTGAAGCTTTAGCTGTGGGAATATTACCTGAGACAAAGAAGCACAAACAAGTATCTAAGGTAGTTCTTTCCCTTGGCATAGTAGGGGGGACTCTTGGAGGAGTAGCACTTGTTTTGCTAGTTTTCTTTATTGTTAGAAGAGGAAATGACAGAAGCAAAACGAAGAATCCTCCAACTAGATTAATATCAGAAAATGCTGCGTCTGGTTACACATCTAAGTTGTTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTGGGAGCAGTTGGCCTGCCGACTTATCGAAGTTTCTCATTGGAAGAGATTGAATCAGCTACAAACTATTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAATGGCTCACTTGTTGCTATTCGGTGTGTAGAAATGAAAAAGAGACACAGCACTCAAAACTTTGTGCAACACATAGAGCTGATATCCAAACTTAGGCATCGCCATCTAGTCAGCGCTATTGGACACTGCTTTGAATGTTCTTTAGATGATTCAAGCGTCAGCAAAGTATTTCTTGTCTTCGAATATGTACCAAATGGCACGCTCAGGAATTGGATCTCTGATGAGCATGCTAGAAAATCCTTTAGTTGGACTCAACGCATAGGAGCTGCAATTGGAGTGGCAAAGGGAATCCAGTTTTTGCATACAGGGATTGTCCCTGGTGTATATTCCAATGATCTGAAGATAGAAGATGTTTTATTGGATCAGAATCTTGTTGCAAAAATCAGCAGTTATCACCTGCCTTTGTTGTCAAACATGGGGAAGGTTCGGCGTGGAAATTCTTCCAGTGGATTAAAAAATTCAAGCAATAGTAAAAGTGTAAAGCAGGAAGATAAGTCTGATATATACAACTTTGGAGTGATACTACTCGAACTTATTCTAGGAAGGCAAATAAAGACAGTAAATGATGCAGATGCTTTTAGGGATCTGTTGCAAGCAAGCTTAGGAGGTGATGAAGAGGGTAGGAGGGGCGTTGTTGATCCAGCATTTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGGTGCCTGGTTAAAGAGCCAGCAGATAGGCCTTCTATAGAGGATGTTTTGTGGAACTTGCAGTTTGCATCTCAAGTACAAGATGCATGGAGAGGGGATTCTCAAAGTAGTGAAGGGTCACCAGGCTCAGAATCTCGAGGGCTACCCTTCCATTAG 2346 0.4113 MANRHHPSVFLVLVTVLLSIHCSEQLQSSHSQTLLRIQQLLNFPAALSNWNSSTDFCNTDSNSSLTVVCYEDTITQLHIIGERRDTPLPRNFSIDSFVTTLVRLPSLKVLTLVSLGIWGPLPSKIARLSSLEIVNMSSNFLYGSIPQELSSLSSLQTLIFDNNMLADTFPHWLDSLQALTVLSLKNNKFNGSLPKSLGNVENLRTLSLSHNHFYGAVPDLSRLTNLQVLELDDNAFGPQFPQLGNKLVILVLRKNSFRSGIPAELSSYYQLERLDISSNSFVGPFQPGLLSLPSITYLNISGNKLTGMLFENLSCNSELDVVDLSSNLLTGSLPRCLVSNSSDSTVLYARNCLDTTNQNQQPQPFCHTEALAVGILPETKKHKQVSKVVLSLGIVGGTLGGVALVLLVFFIVRRGNDRSKTKNPPTRLISENAASGYTSKLFSDARYISQTKKLGAVGLPTYRSFSLEEIESATNYFDTASLMGEDSYGKMYRGQLKNGSLVAIRCVEMKKRHSTQNFVQHIELISKLRHRHLVSAIGHCFECSLDDSSVSKVFLVFEYVPNGTLRNWISDEHARKSFSWTQRIGAAIGVAKGIQFLHTGIVPGVYSNDLKIEDVLLDQNLVAKISSYHLPLLSNMGKVRRGNSSSGLKNSSNSKSVKQEDKSDIYNFGVILLELILGRQIKTVNDADAFRDLLQASLGGDEEGRRGVVDPAFRKACLDQSLKTMMEICVRCLVKEPADRPSIEDVLWNLQFASQVQDAWRGDSQSSEGSPGSESRGLPFH* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0979 781 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Gso19g0979 781 MobiDBLite consensus disorder prediction 760 781 - -
Gso19g0979 781 SUPERFAMILY Protein kinase-like (PK-like) 459 754 IPR011009 -
Gso19g0979 781 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 771 - -
Gso19g0979 781 Gene3D Ribonuclease Inhibitor 27 242 IPR032675 -
Gso19g0979 781 ProSiteProfiles Protein kinase domain profile. 477 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g0979 781 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 6 771 - -
Gso19g0979 781 SUPERFAMILY L domain-like 34 352 - -
Gso19g0979 781 Gene3D Transferase(Phosphotransferase) domain 1 560 768 - -
Gso19g0979 781 Gene3D Ribonuclease Inhibitor 243 361 IPR032675 -
Gso19g0979 781 Gene3D Phosphorylase Kinase; domain 1 448 559 - -
Gso19g0979 781 Pfam Protein tyrosine and serine/threonine kinase 481 747 IPR001245 GO:0004672|GO:0006468
Gso19g0979 781 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0979 Gso-Chr19 37076166 37082265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0979 43 779 Miscellaneous Gene Families AT3G03770 61.725 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gso19g0979 PK_Tyr_Ser-Thr 1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0979 - - gmx:100807539 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0979 19 37076166 37082265 Gso16g0306 16 3489255 3495456 GST
Gso5g0658 5 9496567 9503393 Gso19g0979 19 37076166 37082265 GST