Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0958 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAATCACCAAAGGTGGCAAGTTCAAAGGGAGAAGCAGAAACAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCCTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCAAGAGCCTATGATGAAGCCGCGTGCCTTCTTCGCGGATCCAACACTCGCACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGAAATCTTCTTAACAACAGAAAAGGTATCAAAAAAGAGGAAGATGCTAATGCTAATGCTAATAATGCACCTGCCCCAAGAGTTAGCACTACTAGCAGTGCTACTAGCACTGGTACTAGTAGTAATTCAAGCAATGGAAATGACAACAATGACCAGTCTCTTTCTACCGTAACAACTCAAAGTTCAAATCTGTTTGATGATGCCTATAAACCAGATTTGAGCAATTGCAGGGAGGAGTTTGAGTCAGGTCATCAGTCCAATACTTCATGGTGTTTTGGACCTGTCTTTGATCGTTTCCCTATGGCTCAAATATTCGATATACCAAAGATTGATGATGGCCTCACTAATGCAGCTGATTTGGATCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAATGAAACTCTCTGGGATCTTCCACCCTTATGCTCATTGTTCTGTTAA 828 0.4227 MEIQFQQPNLQHQKSGIAITKGGKFKGRSRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKEEDANANANNAPAPRVSTTSSATSTGTSSNSSNGNDNNDQSLSTVTTQSSNLFDDAYKPDLSNCREEFESGHQSNTSWCFGPVFDRFPMAQIFDIPKIDDGLTNAADLDLSEFERMKVERQISASLYAINGVQEYMETVQDSNETLWDLPPLCSLFC* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0958 275 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Gso19g0958 275 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 262 - -
Gso19g0958 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 262 - -
Gso19g0958 275 MobiDBLite consensus disorder prediction 117 167 - -
Gso19g0958 275 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Gso19g0958 275 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Gso19g0958 275 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Gso19g0958 275 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Gso19g0958 275 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Gso19g0958 275 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Gso19g0958 275 MobiDBLite consensus disorder prediction 128 167 - -
Gso19g0958 275 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0958 Gso-Chr19 36718351 36719452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0958 10 275 AP2-EREBP Transcription Factor Family AT5G19790 41.818 1.12e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso19g0958 AP2 6.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0958 K09286 - gmx:100796898 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g0958 19 36718351 36719452 Gso16g0327 16 3705623 3706865 GST
Gso19g0958 19 36718351 36719452 Gso16g1238 16 31696623 31697958 PCT
Gso19g0958 19 36718351 36719452 Gso2g0603 2 6282204 6283679 PCT
Gso16g1238 16 31696623 31697958 Gso19g0958 19 36718351 36719452 PCT
Gso2g0603 2 6282204 6283679 Gso19g0958 19 36718351 36719452 PCT